View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_37 (Length: 335)
Name: NF4681_low_37
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 123 - 316
Target Start/End: Complemental strand, 35341829 - 35341636
Alignment:
| Q |
123 |
attctgctgcttacataaagtgataatcataggggttactttgtcttttgctctcctgtccagcggacaaaaacttgtcctccaattaagcgggttacaa |
222 |
Q |
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| T |
35341829 |
attctgctgcttacagaaagtgaaaatcataggggttacgttgtcttttgctctcctgtccagcggacaaaaacttgtcctccaattaagcgggttacaa |
35341730 |
T |
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| Q |
223 |
atttcgggagacttgtccagtgctccgctactgtttttgttctattccattgttatcttttggatcaaacaccgcacaacttttattgttctgt |
316 |
Q |
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| T |
35341729 |
atttcgggagacttgtccagtgctccgctactgtttttgttctgttccattgttatcttttggatcaaacaccgcacaacttttattgttctgt |
35341636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 123 - 316
Target Start/End: Original strand, 44184855 - 44185048
Alignment:
| Q |
123 |
attctgctgcttacataaagtgataatcataggggttactttgtcttttgctctcctgtccagcggacaaaaacttgtcctccaattaagcgggttacaa |
222 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44184855 |
attctgctgcttacagaaagtgataatcataggggttacgttgtcttttgctctcctgtccagcggacaaaaacttgtcctccaattaagcgggttacaa |
44184954 |
T |
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| Q |
223 |
atttcgggagacttgtccagtgctccgctactgtttttgttctattccattgttatcttttggatcaaacaccgcacaacttttattgttctgt |
316 |
Q |
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| T |
44184955 |
atttcagtagacttgtccagtgctccgctattgtttttgttctattccattgttatcttttggatcaaacaccgcacaacttttattgttctgt |
44185048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 123 - 316
Target Start/End: Original strand, 10420685 - 10420878
Alignment:
| Q |
123 |
attctgctgcttacataaagtgataatcataggggttactttgtcttttgctctcctgtccagcggacaaaaacttgtcctccaattaagcgggttacaa |
222 |
Q |
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||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10420685 |
attctgctgcttacagaaagtgataatcataggggctacgttgtcttttgctctcctgtccagcggacaaaaacttgtcctccaattaagcgggttacaa |
10420784 |
T |
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| Q |
223 |
atttcgggagacttgtccagtgctccgctactgtttttgttctattccattgttatcttttggatcaaacaccgcacaacttttattgttctgt |
316 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
10420785 |
atttcgggagacttgtccggtgctccggtactgtttttgttctgttccattgttatcttttggatcaaacactgcacaatttttattgttctgt |
10420878 |
T |
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