View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4681_low_39 (Length: 333)
Name: NF4681_low_39
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 47126643 - 47126964
Alignment:
| Q |
1 |
cgtctgcagtccaatcagggtctactgtctgcccaagataaacctcttcagtcgaatgcctagacagaacttctatcaatgacacaccaagaagagtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47126643 |
cgtctgcagtccaatcagggtctactgtctgtccaagataaacctcttcagtcgaatgcctagacagaacttctatcaatgacacaccaagaagagtttg |
47126742 |
T |
|
| Q |
101 |
gaactgagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgctcaggcataaacctacgactaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47126743 |
gaactgagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgctcaggcataaacctacgactaacc |
47126842 |
T |
|
| Q |
201 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47126843 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatataataatggtgcaagattgta |
47126942 |
T |
|
| Q |
301 |
tgagatcgattcttgtcttcat |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47126943 |
tgagatcgattcttgtcttcat |
47126964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 9606339 - 9606270
Alignment:
| Q |
219 |
taacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatgg |
288 |
Q |
| |
|
|||||| ||||||| ||||||||||| || ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
9606339 |
taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatgg |
9606270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 46709155 - 46709234
Alignment:
| Q |
201 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatat |
280 |
Q |
| |
|
|||||||| |||||| |||||||||| |||| |||||||||||||| ||||||||||| | ||| ||||| | |||||| |
|
|
| T |
46709155 |
gttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat |
46709234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 6456151 - 6456223
Alignment:
| Q |
226 |
cataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattg |
298 |
Q |
| |
|
||||||| || ||||||||||| || |||||||||| ||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
6456151 |
cataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaagattg |
6456223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 6449686 - 6449756
Alignment:
| Q |
228 |
taagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattg |
298 |
Q |
| |
|
||||| |||||||| || || ||||||||||||| ||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
6449686 |
taaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataataatggagcaagattg |
6449756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 7457984 - 7458044
Alignment:
| Q |
234 |
tattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaag |
294 |
Q |
| |
|
||||||||||| || ||||||||||||| || ||||| | |||||||| ||||||||||| |
|
|
| T |
7457984 |
tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaag |
7458044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 7470386 - 7470446
Alignment:
| Q |
234 |
tattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaag |
294 |
Q |
| |
|
||||||||||| || ||||||||||||| || ||||| | |||||||| ||||||||||| |
|
|
| T |
7470386 |
tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaag |
7470446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University