View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_4 (Length: 564)
Name: NF4681_low_4
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 10 - 548
Target Start/End: Complemental strand, 35094008 - 35093470
Alignment:
| Q |
10 |
caatgagagcaactaactagtgtaactaacttttacatctaatacaggataccattctataggacaggaaagccttgactggccaagcaggttgaagata |
109 |
Q |
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| T |
35094008 |
caatgagagcaactaactagtgtaactaacttttacatctaatacaggataccattctataggacaggaaagccttgactggccaagcaggttgaagata |
35093909 |
T |
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| Q |
110 |
gtgaaaggtgtagcgaaagggattgaatatctatacaaggagttgccgaacttgattgcgcctcatggtcatcttaaatcctcaaatgttctattgaacg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093908 |
gtgaaaggtgtagcgaaagggattgaatatctatacaaggagttgccgaacttgattgcgcctcatggtcatcttaaatcctcaaatgttctattgaacg |
35093809 |
T |
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| Q |
210 |
agtcattagagcctatactaaccgactacggattagtaccagtgataaaccaggatgttgctcatgaaataatggttatatacgcgtcacctgagtattt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093808 |
agtcattagagcctatactaaccgactacggattagtaccagtgataaaccaggatgttgctcatgaaataatggttatatacgcgtcacctgagtattt |
35093709 |
T |
|
| Q |
310 |
acagcacgggaggataacaaagaagactgatgtgtggagtctcggtatactcattttggaaattctaaccggaaaacttcctgctaatttcctacaacaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093708 |
acagcacgggaggataacaaagaagactgatgtgtggagtctcggtatactcattttggaaattctaaccggaaaacttcctgctaatttcctacaacaa |
35093609 |
T |
|
| Q |
410 |
agtggtaaagggagcgagttgagtttagcgaattgggtggattctgttgtaccggaagagtggagtagcgaggtttttgataaagatatggagttaacaa |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093608 |
agtggtaaagggagcgagttgagtttagcgaattgggtggattctgttgtaccggaagagtggagtagcgaggtttttgataaagatatggagttaacaa |
35093509 |
T |
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| Q |
510 |
gtaataatgagggggagatggttaagcttttgaagattg |
548 |
Q |
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| T |
35093508 |
gtaataatgagggggagatggttaagcttttgaagattg |
35093470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 34239746 - 34239714
Alignment:
| Q |
19 |
caactaactagtgtaactaacttttacatctaa |
51 |
Q |
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| T |
34239746 |
caactaacttgtgtaactaacttttacatctaa |
34239714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 40607 - 40563
Alignment:
| Q |
6 |
tagtcaatgagagcaactaactagtgtaactaacttttacatcta |
50 |
Q |
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| T |
40607 |
tagtcaattagattaactaactagtgtaacttacttttacatcta |
40563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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