View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_46 (Length: 272)
Name: NF4681_low_46
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 38006115 - 38005878
Alignment:
| Q |
22 |
tgcactccaatccctttgcaccatcgtcaacccaacactctccattacatcatcaaccacccctctctctatcctcaacgaactcaaaatctacaaccaa |
121 |
Q |
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| T |
38006115 |
tgcactccaatccctttgcaccatcgtcaacccaacactctccattacatcatcaaccacccctctctctatcctcaacgaactcaaaatctacaaccaa |
38006016 |
T |
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| Q |
122 |
atcgccaccctcctccgccaacccagctccggtgctggcgacaacaatctttgtcgttggctctatgacactttccaatccaatgtcggtgatctccagc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38006015 |
atcgccaccctcctccgccaacccagctccggtgctggcgacaacaatctttgtcgttggctctatgacactttccaatccaatgtcggtgatctccagc |
38005916 |
T |
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| Q |
222 |
tcaccgtcctccgtttcctacctataatcgccggagtt |
259 |
Q |
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| T |
38005915 |
tcaccgtcctccgtttcctacctataatcgccggagtt |
38005878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 26 - 255
Target Start/End: Original strand, 26461702 - 26461931
Alignment:
| Q |
26 |
ctccaatccctttgcaccatcgtcaacccaacactctccattacatcatcaaccacccctctctctatcctcaacgaactcaaaatctacaaccaaatcg |
125 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
26461702 |
ctccaatccctttgcaccatcgtcaatccaacactctccattacctcatcaaccacccctctctctatcctcaacgaacccgaaatctacaaccaaatcg |
26461801 |
T |
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| Q |
126 |
ccaccctcctccgccaacccagctccggtgctggcgacaacaatctttgtcgttggctctatgacactttccaatccaatgtcggtgatctccagctcac |
225 |
Q |
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| T |
26461802 |
ccaccctcctccgccaacccaactccggcgccggtgacaacaatctttgtcgttggctctacgacactttccaatcaaatatcactgatctccaactcac |
26461901 |
T |
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| Q |
226 |
cgtcctccgtttcctacctataatcgccgg |
255 |
Q |
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| T |
26461902 |
cgtcctacgtttcctcccgattatcgccgg |
26461931 |
T |
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