View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4681_low_47 (Length: 265)
Name: NF4681_low_47
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_47 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 16231803 - 16231567
Alignment:
| Q |
19 |
gaaccagccatggaggctgctaaatttacatcccgcgttataatcattaatcacccgtcggtgattacgaaaggatatactcctatcctcgactgccaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16231803 |
gaaccagccatggaggctgctaaatttacatcccgcgttataatcattaatcacccgtcggtgattacgaaaggatatactcctatcctcgactgccaca |
16231704 |
T |
|
| Q |
119 |
cttcacacgttgctgtcaaatttgctaagctggttacaaagttcgatagagaaaccggagtggaattagagaaaaaaccgaagtccttgaagaatggtga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16231703 |
cttcacacgttgctgtcaaatttgctaagctggctacaaagttcgatagagaaaccggagtggaattagagaaaaaaccgaagtccttgaagaatggtga |
16231604 |
T |
|
| Q |
219 |
tgcaggaattgttaagatgattcctatgaagcctatg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16231603 |
tgcaggaattgttaagatgattcctatgaagcctatg |
16231567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 34690462 - 34690233
Alignment:
| Q |
19 |
gaaccagccatggaggctgctaaatttacatcccgcgttataatcattaatcacccgtcggtgattacgaaaggatatactcctatcctcgactgccaca |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||| || |||| ||||| || |||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
34690462 |
gaaccggccatggaggctgctaaatttacatctcgtgttatcgtctttaaccacccttcaaagattaccaaaggatatactcctgtccttgactgccacg |
34690363 |
T |
|
| Q |
119 |
cttcacacgttgctgtcaaatttgctaagctggttacaaagttcgatagagaaaccggagtggaattagagaaaaaaccgaagtccttgaagaatggtga |
218 |
Q |
| |
|
| || ||| ||||||||| ||||||||||| ||||| | ||||||||| ||| | || |||||||| ||||| || || | ||| |||||||||||||| |
|
|
| T |
34690362 |
cctcccacactgctgtcaagtttgctaagcttgttacgatgttcgatagggaatcaggtgtggaattggagaagaagcccatgtctttgaagaatggtga |
34690263 |
T |
|
| Q |
219 |
tgcaggaattgttaagatgattcctatgaa |
248 |
Q |
| |
|
||| | |||||||||||||||||||||| |
|
|
| T |
34690262 |
tgccgctgttgttaagatgattcctatgaa |
34690233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 34712874 - 34712645
Alignment:
| Q |
19 |
gaaccagccatggaggctgctaaatttacatcccgcgttataatcattaatcacccgtcggtgattacgaaaggatatactcctatcctcgactgccaca |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||| || |||| ||||| || |||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
34712874 |
gaaccggccatggaggctgctaaatttacatctcgtgttatcgtctttaaccacccttcaaagattaccaaaggatatactcctgtccttgactgccacg |
34712775 |
T |
|
| Q |
119 |
cttcacacgttgctgtcaaatttgctaagctggttacaaagttcgatagagaaaccggagtggaattagagaaaaaaccgaagtccttgaagaatggtga |
218 |
Q |
| |
|
| || ||| ||||||||| ||||||||||| ||||| | ||||||||| ||| | || |||||||| ||||| || || | ||| |||||||||||||| |
|
|
| T |
34712774 |
cctcccacactgctgtcaagtttgctaagcttgttacgatgttcgatagggaatcaggtgtggaattggagaagaagcccatgtctttgaagaatggtga |
34712675 |
T |
|
| Q |
219 |
tgcaggaattgttaagatgattcctatgaa |
248 |
Q |
| |
|
||| | |||||||||||||||||||||| |
|
|
| T |
34712674 |
tgccgctgttgttaagatgattcctatgaa |
34712645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 38138521 - 38138660
Alignment:
| Q |
22 |
ccagccatggaggctgctaaatttacatcccgcgttataatcattaatcaccc-gtcggtgattacgaaaggatatactcctatcctcgactgccacact |
120 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| |||| ||||| | | | | |||| || || ||||| ||||| || ||||||||||| |
|
|
| T |
38138521 |
ccagccacggaggctgctaaatttacatcccgtgttatcatcacgaatcaaactggccg-gattcaaaatggctatacacctattctggactgccacacc |
38138619 |
T |
|
| Q |
121 |
tcacacgttgctgtcaaatttgctaagctggttacaaagtt |
161 |
Q |
| |
|
|| |||||| ||||||| ||||||||||| ||||| ||||| |
|
|
| T |
38138620 |
tcccacgttcctgtcaagtttgctaagcttgttaccaagtt |
38138660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 7891685 - 7891745
Alignment:
| Q |
94 |
tatactcctatcctcgactgccacacttcacacgttgctgtcaaatttgctaagctggtta |
154 |
Q |
| |
|
||||| ||||| |||||||||||||| || ||| |||||||||| ||||| ||||| |||| |
|
|
| T |
7891685 |
tatacacctattctcgactgccacacctcccacattgctgtcaagtttgccaagcttgtta |
7891745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University