View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4681_low_49 (Length: 258)

Name: NF4681_low_49
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4681_low_49
NF4681_low_49
[»] chr5 (1 HSPs)
chr5 (33-125)||(1088854-1088947)
[»] chr1 (4 HSPs)
chr1 (60-125)||(81394-81459)
chr1 (33-125)||(14207519-14207610)
chr1 (39-83)||(33568421-33568465)
chr1 (37-81)||(47671441-47671484)
[»] chr7 (1 HSPs)
chr7 (33-81)||(6803044-6803092)
[»] chr4 (2 HSPs)
chr4 (33-125)||(48488974-48489066)
chr4 (33-82)||(33610601-33610650)
[»] chr6 (1 HSPs)
chr6 (24-82)||(19248483-19248541)
[»] chr2 (2 HSPs)
chr2 (35-125)||(40365728-40365821)
chr2 (37-81)||(40368230-40368274)
[»] chr3 (3 HSPs)
chr3 (22-96)||(47745717-47745791)
chr3 (31-95)||(33334812-33334876)
chr3 (37-81)||(3159435-3159479)
[»] chr8 (1 HSPs)
chr8 (37-81)||(42453245-42453288)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 1088854 - 1088947
Alignment:
Q  33 actttgtaaatattcttcggtgtttctccttttgcacatcttgtgcggggt-taacatcgttggtgtcgtaatataattccattttgatttgtt 125  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||    
T  1088854 actttgtaaatattcttcggtgtttctcctttcgcacatcttgtgcggggtgtaacatcgttgttttcgtaatttaattccattttgatttgtt 1088947  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 81459 - 81394
Alignment:
Q  60 ccttttgcacatcttgtgcggggttaacatcgttggtgtcgtaatataattccattttgatttgtt 125  Q
    ||||||||||||||| || ||||| | |||||||||| | ||||||||||||||||||||||||||    
T  81459 ccttttgcacatcttatgtggggtgatcatcgttggtttagtaatataattccattttgatttgtt 81394  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 14207519 - 14207610
Alignment:
Q  33 actttgtaaatattcttcggtgtttctccttttgcacatcttgtgcggggttaacatcgttggtgtcgtaatataattccattttgatttgtt 125  Q
    |||||||||||| |  ||| |||||||||||||||||  ||||||||||| ||| ||||||||  | ||||||| ||  ||||||||||||||    
T  14207519 actttgtaaatagttctcgatgtttctccttttgcacgccttgtgcgggggtaatatcgttggcttagtaatat-atctcattttgatttgtt 14207610  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 33568465 - 33568421
Alignment:
Q  39 taaatattcttcggtgtttctccttttgcacatcttgtgcggggt 83  Q
    |||||||| | ||||||||||||||||||||||||| ||||||||    
T  33568465 taaatattttccggtgtttctccttttgcacatcttatgcggggt 33568421  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 47671441 - 47671484
Alignment:
Q  37 tgtaaatattcttcggtgtttctccttttgcacatcttgtgcggg 81  Q
    |||||||||| ||| ||||||||||||||||||| ||||||||||    
T  47671441 tgtaaatatt-ttcagtgtttctccttttgcacaccttgtgcggg 47671484  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 6803044 - 6803092
Alignment:
Q  33 actttgtaaatattcttcggtgtttctccttttgcacatcttgtgcggg 81  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  6803044 actttgtaaatatttttcggtgtttctccttttgcacaccttgtgcggg 6803092  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 48489066 - 48488974
Alignment:
Q  33 actttgtaaatattcttcggtgtttctccttttgcacatcttgtgcggg-gttaacatcgttggtgtcgtaatataattccattttgatttgtt 125  Q
    ||||||||||||||  |||||||| ||||||||||||| |||||||||| | ||||||||||  | ||||||||| ||  ||||||||||||||    
T  48489066 actttgtaaatatttctcggtgttcctccttttgcacaccttgtgcgggtggtaacatcgttaatctcgtaatat-atctcattttgatttgtt 48488974  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 33610601 - 33610650
Alignment:
Q  33 actttgtaaatattcttcggtgtttctccttttgcacatcttgtgcgggg 82  Q
    ||||||||||||||  | |||||||||||||||||||| |||||||||||    
T  33610601 actttgtaaatatttcttggtgtttctccttttgcacaccttgtgcgggg 33610650  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 19248541 - 19248483
Alignment:
Q  24 gacatcatgactttgtaaatattcttcggtgtttctccttttgcacatcttgtgcgggg 82  Q
    |||||| |||||||||||||| | ||||||||||  ||| |||||||||||||||||||    
T  19248541 gacatcttgactttgtaaatacttttcggtgttttgcctcttgcacatcttgtgcgggg 19248483  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 40365821 - 40365728
Alignment:
Q  35 tttgtaaatattcttcggtgtttctccttttgcacatcttgtgcggggt-taacatcgttggtgtcgtaatata--attccattttgatttgtt 125  Q
    |||||||||||| | |||||||| |||||||||||||||||||||| ||  ||||| |||||| | ||||||||  ||  ||||||||||||||    
T  40365821 tttgtaaatattttccggtgtttttccttttgcacatcttgtgcggagtgaaacattgttggtttagtaatatactatctcattttgatttgtt 40365728  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 40368274 - 40368230
Alignment:
Q  37 tgtaaatattcttcggtgtttctccttttgcacatcttgtgcggg 81  Q
    |||||||||| |||| |||||||||||||||||| ||||||||||    
T  40368274 tgtaaatatttttcgatgtttctccttttgcacaccttgtgcggg 40368230  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 47745791 - 47745717
Alignment:
Q  22 ttgacatcatgactttgtaaata-ttcttcggtgtttctccttttgcacatcttgtgcggggttaacatcgttggt 96  Q
    ||||||||||||||||||||||| || || |||| ||| ||||||||||| ||| |||||||| | ||||||||||    
T  47745791 ttgacatcatgactttgtaaatattttttaggtgcttc-ccttttgcacaccttatgcggggtgatcatcgttggt 47745717  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 33334876 - 33334812
Alignment:
Q  31 tgactttgtaaatattcttcggtgtttctccttttgcacatcttgtgcggg-gttaacatcgttgg 95  Q
    ||||| |||||||||| |||||||||  |||||||||||| |||||||||| | ||||||||||||    
T  33334876 tgactctgtaaatatt-ttcggtgttcatccttttgcacaccttgtgcgggtggtaacatcgttgg 33334812  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 3159479 - 3159435
Alignment:
Q  37 tgtaaatattcttcggtgtttctccttttgcacatcttgtgcggg 81  Q
    |||||||||| || |||||| ||||||||||||| ||||||||||    
T  3159479 tgtaaatattttttggtgttcctccttttgcacaccttgtgcggg 3159435  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 42453245 - 42453288
Alignment:
Q  37 tgtaaatattcttcggtgtttctccttttgcacatcttgtgcggg 81  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||    
T  42453245 tgtaaatatt-ttcggtgtttctccttttgcacaccttgtacggg 42453288  T

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