View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_5 (Length: 542)
Name: NF4681_low_5
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 215 - 515
Target Start/End: Complemental strand, 51581376 - 51581077
Alignment:
| Q |
215 |
acatatgcttattttttcggcgatctgctgacgtgtcagagtgggtctggaccgtccgtgtgtggagatggagggtggagattaaaagttgaaatgtgga |
314 |
Q |
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| T |
51581376 |
acatatgcttattttttcggcgatctgctgacgtgtcagggtgggt-tggaccgttcgtgtgtggagatggagggtggagattaaaagttgaaatgtgga |
51581278 |
T |
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| Q |
315 |
atctgtatgcatacttgttgttttaccagaagaaagaaaactagtggcgcgttcttaccgggtactgttctcaagtgttatgatgctgccccctgatttt |
414 |
Q |
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| T |
51581277 |
atctgtatgcatacttgttgttttaccagaagaaagaaaactagtggcgcgttcttaccgggtactgttctcaagtgttatgatgctgccccctgatttt |
51581178 |
T |
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| Q |
415 |
caacaacatatatttttgtaatatttaattacaaatatctactaaacaaaagtaaataaaacgcatagaataaattctccactatgtctcatactcctat |
514 |
Q |
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| T |
51581177 |
caacaacatatatttttgtaatatttaattacaaatatctaccaaacaaaagtaaataaaacgcatagaataaattctctactatgtctcatactcctat |
51581078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 51581565 - 51581519
Alignment:
| Q |
19 |
attagattcgcttgacgccatttcttcactctaaagaatcttcacga |
65 |
Q |
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| T |
51581565 |
attagattcgcttgacgccatttcttcactctaaagaatcttcacga |
51581519 |
T |
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