View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4681_low_55 (Length: 250)

Name: NF4681_low_55
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4681_low_55
NF4681_low_55
[»] chr3 (6 HSPs)
chr3 (23-203)||(31395632-31395811)
chr3 (93-163)||(38555056-38555126)
chr3 (80-163)||(28226203-28226286)
chr3 (98-164)||(43566829-43566895)
chr3 (80-164)||(13616090-13616173)
chr3 (100-164)||(16006541-16006605)
[»] chr7 (5 HSPs)
chr7 (55-166)||(41507710-41507821)
chr7 (97-166)||(48082193-48082263)
chr7 (100-164)||(32919853-32919917)
chr7 (100-164)||(46337903-46337967)
chr7 (93-164)||(43970881-43970952)
[»] chr8 (4 HSPs)
chr8 (89-160)||(25139911-25139982)
chr8 (108-161)||(26703934-26703986)
chr8 (97-164)||(2376514-2376581)
chr8 (100-163)||(21133554-21133618)
[»] chr4 (6 HSPs)
chr4 (98-167)||(26708585-26708654)
chr4 (93-164)||(9172399-9172470)
chr4 (100-163)||(34106598-34106661)
chr4 (90-164)||(55266460-55266534)
chr4 (95-164)||(33944393-33944462)
chr4 (100-169)||(40150463-40150533)
[»] chr2 (6 HSPs)
chr2 (98-164)||(3179320-3179386)
chr2 (80-149)||(44721720-44721788)
chr2 (80-149)||(17239912-17239980)
chr2 (100-164)||(10262735-10262799)
chr2 (90-134)||(39726459-39726504)
chr2 (102-134)||(25777479-25777511)
[»] scaffold0191 (1 HSPs)
scaffold0191 (93-134)||(16872-16913)
[»] chr1 (7 HSPs)
chr1 (80-164)||(538345-538428)
chr1 (89-166)||(47763409-47763487)
chr1 (108-149)||(15051558-15051598)
chr1 (100-164)||(23930579-23930643)
chr1 (95-154)||(5680718-5680777)
chr1 (94-161)||(8364437-8364504)
chr1 (117-165)||(50755340-50755387)
[»] chr5 (3 HSPs)
chr5 (80-166)||(6447496-6447582)
chr5 (80-164)||(18872517-18872600)
chr5 (119-160)||(22647140-22647180)
[»] chr6 (5 HSPs)
chr6 (80-149)||(35190774-35190842)
chr6 (100-164)||(10373591-10373655)
chr6 (100-149)||(11982773-11982821)
chr6 (108-164)||(24623518-24623573)
chr6 (93-164)||(34365731-34365802)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 31395811 - 31395632
Alignment:
Q  23 gagaacatgcgtcactgtttcaaagtaatctattgactagaattcatcattgaatacgaataaatggggatgttcgaggttcgaacccgacccttgcata 122  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  31395811 gagaacatgcgtcactgtttcaaagtaatctattggctagaattcatcattgaatatgaataaatgggggtgttcgaggttcgaatccgacccttgcata 31395712  T
Q  123 taataatgcattctttctaccaactgaattatgttcacgggaacctcgagaattactttcactatacacacaacaatatcc 203  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  31395711 taataatgcattctttcaaccaactgaattatgttcac-ggaaccgcgacaattactttcactatacacacaacaatatcc 31395632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 38555056 - 38555126
Alignment:
Q  93 tgttcgaggttcgaacccgacccttgcatataataatgcattctttctaccaactgaattatgttcacggg 163  Q
    |||| |||||||||||||||||| |||||||||||||||||| | ||| ||||||||| |||| |||||||    
T  38555056 tgtttgaggttcgaacccgacccctgcatataataatgcattgtctctgccaactgaactatgctcacggg 38555126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 28226203 - 28226286
Alignment:
Q  80 gaataaatggggatgttcgaggttcgaacccga-cccttgcatataataatgcattctttctaccaactgaattatgttcacggg 163  Q
    |||||| ||||| |||||| | ||||||||| | ||| |||||||||||||||||| || || |||||||| |||||||||||||    
T  28226203 gaataagtgggg-tgttcgggattcgaaccccaacccctgcatataataatgcattgttcctgccaactgagttatgttcacggg 28226286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 43566829 - 43566895
Alignment:
Q  98 gaggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    ||||||||||||| ||||| ||||||||||||||||||  | |||||||||||  |||||||||||||    
T  43566829 gaggttcgaaccccgacccctgcatataataatgcatt-gtcctaccaactgagctatgttcacggga 43566895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 13616090 - 13616173
Alignment:
Q  80 gaataaatggggatgttcgaggttcgaac-ccgacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    |||||| ||||| ||| |||||||||||| ||||||| | ||||||||||||||||  | |||||||| || ||||||||||||||    
T  13616090 gaataagtgggg-tgtccgaggttcgaactccgacccctacatataataatgcatt-gtcctaccaaccgagttatgttcacggga 13616173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 16006541 - 16006605
Alignment:
Q  100 ggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    ||||||||||| ||| ||||||||| |||||||||| || ||||||||||| ||||| ||||||||    
T  16006541 ggttcgaaccccgactcttgcatattataatgcattgtt-ctaccaactgagttatgctcacggga 16006605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 41507710 - 41507821
Alignment:
Q  55 ttgactagaattcatcattgaatacgaataaatggggatgttcgaggttcgaac-ccgacccttgcatataataatgcattctttctaccaactgaatta 153  Q
    |||||||||||||||| |  ||   |||||||||||| |||| ||||||||||| |||||||||  |||||| |||||||| || ||||||||||| |||    
T  41507710 ttgactagaattcatcttataaagtgaataaatgggg-tgtttgaggttcgaactccgacccttatatataacaatgcattgttcctaccaactgagtta 41507808  T
Q  154 tgttcacgggaac 166  Q
    |||||||||||||    
T  41507809 tgttcacgggaac 41507821  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 48082263 - 48082193
Alignment:
Q  97 cgaggttcgaacc-cgacccttgcatataataatgcattctttctaccaactgaattatgttcacgggaac 166  Q
    |||| |||||||| |||||| | ||||||||||||| || || |||||||||||||| || ||||||||||    
T  48082263 cgagattcgaacctcgacccctacatataataatgcgttgttcctaccaactgaattgtgctcacgggaac 48082193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 32919853 - 32919917
Alignment:
Q  100 ggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    ||||||||||| ||||||||||||||||||| |||| | | ||||||||||  |||||||||||||    
T  32919853 ggttcgaaccccgacccttgcatataataatacattatct-taccaactgagctatgttcacggga 32919917  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 46337903 - 46337967
Alignment:
Q  100 ggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    ||||||||||| || || |||||||||||||||||| |  |||||||||||| |||||||||||||    
T  46337903 ggttcgaaccccgatccctgcatataataatgcattgtc-ctaccaactgaactatgttcacggga 46337967  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 43970881 - 43970952
Alignment:
Q  93 tgttcgaggttcgaacccgaccct-tgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    ||||||||||||||||||   | | |||||||||||||||||| || ||||||||||| ||||| ||||||||    
T  43970881 tgttcgaggttcgaaccccgtcttctgcatataataatgcattgtt-ctaccaactgagttatgctcacggga 43970952  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 25139911 - 25139982
Alignment:
Q  89 gggatgttcgaggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcac 160  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||  ||||| ||||||||||||||||||    
T  25139911 gggatgttcggggttcgaaccccgacccctgcatataataatgcatt-gttctaacaactgaattatgttcac 25139982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 26703934 - 26703986
Alignment:
Q  108 cccgacccttgcatataataatgcattctttctaccaactgaattatgttcacg 161  Q
    |||||||||||||||||||||||||||  | ||||||||||| ||||| |||||    
T  26703934 cccgacccttgcatataataatgcatt-gtcctaccaactgagttatgctcacg 26703986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 2376581 - 2376514
Alignment:
Q  97 cgaggttcgaacccg-acccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    ||||||||||||||| |||| ||||||||||||||||||  | ||||||| |||| |||| ||||||||    
T  2376581 cgaggttcgaacccggacccctgcatataataatgcatt-gtcctaccaattgaactatgctcacggga 2376514  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 21133554 - 21133618
Alignment:
Q  100 ggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggg 163  Q
    ||||||||||| ||| | |||||||||||||||||| || || |||||||| ||||| |||||||    
T  21133554 ggttcgaaccccgactcctgcatataataatgcattgttcctgccaactgagttatgctcacggg 21133618  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 26708585 - 26708654
Alignment:
Q  98 gaggttcgaacccgacccttgcatataataatgcattctttctaccaactgaattatgttcacgggaacc 167  Q
    ||||||||||||| |||| |||||||||||||||||| |  ||||||||||| ||||  |||||||||||    
T  26708585 gaggttcgaacccaacccctgcatataataatgcattgtccctaccaactgagttattatcacgggaacc 26708654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 9172399 - 9172470
Alignment:
Q  93 tgttcgaggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  | ||||||||||| ||||| ||||||||    
T  9172399 tgttcgaggttcgaaccccgacccctgcatataataatgcatt-gtcctaccaactgagttatgctcacggga 9172470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 34106661 - 34106598
Alignment:
Q  100 ggttcgaacccgacccttgcatataataatgcattctttctaccaactgaattatgttcacggg 163  Q
    |||||||||||||||  |||||||||||||||||| || || ||||||||  |||| |||||||    
T  34106661 ggttcgaacccgacctctgcatataataatgcattgttcctgccaactgagctatgctcacggg 34106598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 55266460 - 55266534
Alignment:
Q  90 ggatgttcgaggttcgaac-ccgacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    ||||||||| | ||||||| ||||||| ||||||||||||||||||  |||||||||||||  |||| ||||||||    
T  55266460 ggatgttcgggattcgaactccgacccctgcatataataatgcatt-gttctaccaactgagctatgctcacggga 55266534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 33944393 - 33944462
Alignment:
Q  95 ttcgaggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    |||||||||||||||| | ||| ||||||||||||||||||  | ||||||||||| ||||| ||||||||    
T  33944393 ttcgaggttcgaaccccggcccctgcatataataatgcatt-atcctaccaactgagttatgctcacggga 33944462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 40150533 - 40150463
Alignment:
Q  100 ggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacgggaacctc 169  Q
    ||||||||||| ||||| || ||||||||||||||| || || ||||||||| |||| ||||||| |||||    
T  40150533 ggttcgaaccccgacccctgtatataataatgcattgttcctgccaactgaactatgctcacggggacctc 40150463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 3179386 - 3179320
Alignment:
Q  98 gaggttcgaacc-cgacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    |||||||||||| |||||| ||||||||||||||||||  ||||||||||||| ||||| ||||||||    
T  3179386 gaggttcgaacctcgacccctgcatataataatgcatt-gttctaccaactgagttatgctcacggga 3179320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 44721720 - 44721788
Alignment:
Q  80 gaataaatggggatgttcgaggttcgaaccc-gacccttgcatataataatgcattctttctaccaactga 149  Q
    |||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||  |||||||||||||    
T  44721720 gaataaatgggg-tgtccgaggttcgaaccccgacccctgcatataataatgcatt-gttctaccaactga 44721788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 17239980 - 17239912
Alignment:
Q  80 gaataaatggggatgttcgaggttcgaa-cccgacccttgcatataataatgcattctttctaccaactga 149  Q
    |||||| ||||| ||| ||||||||||| |||||||| ||||||||||||||||||  |||||||||||||    
T  17239980 gaataagtgggg-tgtccgaggttcgaatcccgacccctgcatataataatgcatt-gttctaccaactga 17239912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 10262799 - 10262735
Alignment:
Q  100 ggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    ||||||||||| ||||| ||||||||||||||||||  | ||||||||||| ||||| ||||||||    
T  10262799 ggttcgaaccccgacccctgcatataataatgcatt-gtcctaccaactgagttatgctcacggga 10262735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 39726459 - 39726504
Alignment:
Q  90 ggatgttcgaggttcgaacc-cgacccttgcatataataatgcatt 134  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||    
T  39726459 ggatgttcgaggttcgaacctcgacccctacatataataatgcatt 39726504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 25777511 - 25777479
Alignment:
Q  102 ttcgaacccgacccttgcatataataatgcatt 134  Q
    ||||| |||||||||||||||||||||||||||    
T  25777511 ttcgaccccgacccttgcatataataatgcatt 25777479  T

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Target: scaffold0191 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 16913 - 16872
Alignment:
Q  93 tgttcgaggttcgaacccgacccttgcatataataatgcatt 134  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  16913 tgttcggggttcgaacccgacccctgcatataataatgcatt 16872  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 538345 - 538428
Alignment:
Q  80 gaataaatggggatgttcgaggttcgaac-ccgacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    |||||| ||||| |||||| ||||||||| ||| ||| |||||||||||||||||| || |||||||||||| |||| ||||||||    
T  538345 gaataagtgggg-tgttcggggttcgaactccggcccctgcatataataatgcattgtt-ctaccaactgaactatgctcacggga 538428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 47763409 - 47763487
Alignment:
Q  89 gggatgttcgaggttcgaac-ccgacccttgcatataataatgcattctttctaccaactgaattatgttcacgggaac 166  Q
    ||||||| |||||||||||| ||| ||| |||||||||||||||||| |  || ||||||||  |||| ||||||||||    
T  47763409 gggatgtccgaggttcgaactccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggaac 47763487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 15051598 - 15051558
Alignment:
Q  108 cccgacccttgcatataataatgcattctttctaccaactga 149  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  15051598 cccgacccttgcatataataatgcatt-gttctaccaactga 15051558  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 23930579 - 23930643
Alignment:
Q  100 ggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    ||||||||||| ||||| ||||||||||||||||||  | |||||||||||| |||| ||||||||    
T  23930579 ggttcgaaccccgacccctgcatataataatgcatt-gtcctaccaactgaactatgctcacggga 23930643  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 5680777 - 5680718
Alignment:
Q  95 ttcgaggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattat 154  Q
    |||||||||||||||| ||||| | |||||||||||||||| | | |||||||||||||||    
T  5680777 ttcgaggttcgaaccccgacccctacatataataatgcattatct-taccaactgaattat 5680718  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 8364437 - 8364504
Alignment:
Q  94 gttcgaggttcgaac-ccgacccttgcatataataatgcattctttctaccaactgaattatgttcacg 161  Q
    ||||| ||||||||| ||||||| | |||||||||||||||| || ||||||||||| ||||| |||||    
T  8364437 gttcggggttcgaactccgacccatacatataataatgcatt-ttcctaccaactgagttatgctcacg 8364504  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 50755387 - 50755340
Alignment:
Q  117 tgcatataataatgcattctttctaccaactgaattatgttcacgggaa 165  Q
    ||||||||||||| |||| || |||||||||||| ||||||||||||||    
T  50755387 tgcatataataattcattatt-ctaccaactgaactatgttcacgggaa 50755340  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 6447496 - 6447582
Alignment:
Q  80 gaataaatggggatgttcgaggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacgggaac 166  Q
    |||||| ||||| ||| |||||||||||||| | ||| |||||||||||||||||| |  || |||||||| ||||| ||||||||||    
T  6447496 gaataagtgggg-tgtccgaggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagttatgctcacgggaac 6447582  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 18872600 - 18872517
Alignment:
Q  80 gaataaatggggatgttcgaggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    |||||| ||||| |||||| ||||||||||| ||||| ||||||||||||||||||  | |||||||||||  |||| ||||||||    
T  18872600 gaataagtgggg-tgttcggggttcgaaccccgacccctgcatataataatgcatt-gtcctaccaactgagctatgctcacggga 18872517  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 22647180 - 22647140
Alignment:
Q  119 catataataatgcattctttctaccaactgaattatgttcac 160  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  22647180 catataataatgcattatt-ctaccaactgaattatgttcac 22647140  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 35190842 - 35190774
Alignment:
Q  80 gaataaatggggatgttcgaggttcgaac-ccgacccttgcatataataatgcattctttctaccaactga 149  Q
    |||||| ||||| |||||| ||||||||| ||||||| ||||||||||||||||||  |||||||||||||    
T  35190842 gaataagtgggg-tgttcggggttcgaactccgacccctgcatataataatgcatt-gttctaccaactga 35190774  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 10373655 - 10373591
Alignment:
Q  100 ggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    ||||||||||| ||||| ||||||||||||||||||  ||||||||||| | ||||| ||||||||    
T  10373655 ggttcgaaccccgacccctgcatataataatgcatt-gttctaccaactaagttatgctcacggga 10373591  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 11982821 - 11982773
Alignment:
Q  100 ggttcgaacccgacccttgcatataataatgcattctttctaccaactga 149  Q
    ||||| |||||||||| ||||||||||||||||||  |||||||||||||    
T  11982821 ggttcaaacccgacccctgcatataataatgcatt-attctaccaactga 11982773  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 24623573 - 24623518
Alignment:
Q  108 cccgacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    |||||||||||||||||||||||||||  | |||||||||||  |||||||| ||||    
T  24623573 cccgacccttgcatataataatgcatt-gtcctaccaactgagctatgttcatggga 24623518  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 34365802 - 34365731
Alignment:
Q  93 tgttcgaggttcgaaccc-gacccttgcatataataatgcattctttctaccaactgaattatgttcacggga 164  Q
    |||||||||||||||||| | ||| |||| ||||||||||||| |  |||||||||||| |||| ||||||||    
T  34365802 tgttcgaggttcgaaccccggcccctgcacataataatgcattgtc-ctaccaactgaactatgctcacggga 34365731  T

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