View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_56 (Length: 248)
Name: NF4681_low_56
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_56 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 11103774 - 11103544
Alignment:
| Q |
15 |
atgaacatgagcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcc |
114 |
Q |
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| T |
11103774 |
atgaacatgagcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcc |
11103675 |
T |
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| Q |
115 |
cattgccactgattgtacnnnnnnnttacatatattaattagatgcaaattaagtatatattaaaatcatacaatagcacaaataggctaactagattaa |
214 |
Q |
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| T |
11103674 |
cattgcgactgattgtgcaaaaaaa-tacatatattaattagatggaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaa |
11103576 |
T |
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| Q |
215 |
ggtacgtaacaaaatattacatttctatgttgct |
248 |
Q |
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| T |
11103575 |
ggt--taaaaaaaatattacatttctatgttgct |
11103544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 11590212 - 11589990
Alignment:
| Q |
15 |
atgaacatgagcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcc |
114 |
Q |
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| T |
11590212 |
atgaacatgagcaaaaatgctatctctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcc |
11590113 |
T |
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| Q |
115 |
cattgccactgattgtacnnnnnnnttacatatattaattagatgcaaattaagtatatattaaaatcatacaatagcacaaata-ggctaactagatta |
213 |
Q |
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| T |
11590112 |
cattgcgactgattgtacaaaaaaattacatatattaattagattc---------atatattaaaatcatacaatagcacaaatagggataactagatta |
11590022 |
T |
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| Q |
214 |
aggtacgtaacaaaatattacatttctatgttgct |
248 |
Q |
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| T |
11590021 |
aggt---taaaaaaatattacatttctatgttgct |
11589990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 11115628 - 11115513
Alignment:
| Q |
15 |
atgaacatgagcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcc |
114 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11115628 |
atgaacataagcaagaatgctatttctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatggttgtcccatgtttcttcc |
11115529 |
T |
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| Q |
115 |
cattgccactgattgt |
130 |
Q |
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| T |
11115528 |
cattgccactgattgt |
11115513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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