View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_6 (Length: 541)
Name: NF4681_low_6
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 186 - 525
Target Start/End: Complemental strand, 11484948 - 11484609
Alignment:
| Q |
186 |
ttacctatatttttaataggctaaatcaactttaaacttattctattggactaatatgaatgaatctacacatttagattcaaaggtcttttgccaacaa |
285 |
Q |
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| T |
11484948 |
ttacctatatttttaataggctaaatcaactttaaacttattctattggactaatatgaatgaatctaaacatttagattcaaaggtcttttgccaacaa |
11484849 |
T |
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| Q |
286 |
gttgaacaatttgctcatcttctcaagtttgttcatatcaggaagtgcagtaccgattggataaagtaaggccaactgatatatttgttgggtttgttgc |
385 |
Q |
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| T |
11484848 |
gttgaacaagttgcgcatcttctcaagtttgttcatatcaggaagtgcagtaccgattggataaagtaaggccaactgatacatttgttgggtttgttgc |
11484749 |
T |
|
| Q |
386 |
aagttgtcattgtcattgtccttgttatttaaggtagctgtgtcttgaggaggaatttcatgttgtttttcaatacgatgagtggcttcttgttgttcaa |
485 |
Q |
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| T |
11484748 |
aagttgtcattgtcattgtccttgttatttaaggtagctgtgtcttgaggaggaatttcatgttgtttttcaatacgatgagtggcttcttgttgttcaa |
11484649 |
T |
|
| Q |
486 |
gagggacagtgactattgtgtcattattgtttaaggttat |
525 |
Q |
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| T |
11484648 |
gagggacagtgactattgtgtcattattgtttaaggttat |
11484609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 11485041 - 11484981
Alignment:
| Q |
93 |
caaaactaaatatatagtatttggtggaatgtatgaatgagttttactatatcaaattgtc |
153 |
Q |
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| T |
11485041 |
caaaattaaatatatagtatttggtggaatgtatgaaagagttttactatatcaaattgtc |
11484981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 38167086 - 38167025
Alignment:
| Q |
290 |
aacaatttgctcatcttctcaagtttgttcatatcaggaagtgcagtaccgattggataaag |
351 |
Q |
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| T |
38167086 |
aacaagttgcacatcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaag |
38167025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 38172794 - 38172855
Alignment:
| Q |
290 |
aacaatttgctcatcttctcaagtttgttcatatcaggaagtgcagtaccgattggataaag |
351 |
Q |
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| T |
38172794 |
aacaagttgcacatcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaag |
38172855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 38200018 - 38200079
Alignment:
| Q |
290 |
aacaatttgctcatcttctcaagtttgttcatatcaggaagtgcagtaccgattggataaag |
351 |
Q |
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| T |
38200018 |
aacaagttgcacatcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaag |
38200079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 11485157 - 11485077
Alignment:
| Q |
11 |
catagggaatatgggaacaatacatagacnnnnnnntaataataaaagcctatgcaaccaaactaaatattttttcagaga |
91 |
Q |
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| T |
11485157 |
catagagaatatgggaacaatacatagacaaaaaaataataaagaaagcctatccaaccaaactaaatattttttcagaga |
11485077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 11590259 - 11590201
Alignment:
| Q |
296 |
ttgctcatcttctcaagtttgttcatatcaggaagtgcagtaccgattggataaagtaa |
354 |
Q |
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| T |
11590259 |
ttgcacatcttttcaagtttcttcataacaggaggtgtagtaccgattggataaagtaa |
11590201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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