View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_7 (Length: 505)
Name: NF4681_low_7
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 5e-88; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 42 - 306
Target Start/End: Original strand, 24641848 - 24642112
Alignment:
| Q |
42 |
agatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtgga |
141 |
Q |
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| T |
24641848 |
agatctgagaaaggattatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctgacaagctcatatcagctgtgga |
24641947 |
T |
|
| Q |
142 |
tgaaactgcgtgacaacataaagatgtcaaaaacagtaacatagttggggatagtggtttaaatgggttattgtttatagcttcatacttagttcccgct |
241 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||| ||||| |||||| |||||||||||||||| ||| |
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| T |
24641948 |
tgaaactgcgtgacaacatagagatgtcaaaaacagcaacattgttggggatagtggttgaaacgggttggtgtttaaagcttcatacttagttgaagct |
24642047 |
T |
|
| Q |
242 |
aaagttaccaacaaacccatacgaataaaataagatttgttgttatgcgtagtcattccgttttg |
306 |
Q |
| |
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||||| |||||||||||||| ||| ||| |||| ||||| ||| ||||| |||||| |||||| |
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| T |
24642048 |
aaagtcaccaacaaacccatcagaaaaaagtaagctttgtaattacgcgtaatcattctgttttg |
24642112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 46 - 306
Target Start/End: Original strand, 24693221 - 24693481
Alignment:
| Q |
46 |
ctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaa |
145 |
Q |
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|||||| ||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24693221 |
ctgagagaggataatccacaaaagtgtctcacatccaacaacaccagaaaagtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaa |
24693320 |
T |
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| Q |
146 |
actgcgtgacaacataaagatgtcaaaaacagtaacatagttggggatagtggtttaaatgggttattgtttatagcttcatacttagttcccgctaaag |
245 |
Q |
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| T |
24693321 |
actgcgtgacaacatagagatgtcaaaaacagcaacatagttggagatagtggtttaaatgggttagtgtttaaagcttcatacttagttgaagctaaat |
24693420 |
T |
|
| Q |
246 |
ttaccaacaaacccatacgaataaaataagatttgttgttatgcgtagtcattccgttttg |
306 |
Q |
| |
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| T |
24693421 |
tcaccaacaaacccatcaaaataaaataagctttgtaattatgcgtaatcattctgttttg |
24693481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 24720734 - 24720867
Alignment:
| Q |
13 |
gaataagttaatgataaaccaattcctccagatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24720734 |
gaataagttaatgataaaccaattcctccagatctgagaaaggattatccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatata |
24720833 |
T |
|
| Q |
113 |
gtagctgacaagctcatatcagctgtggatgaaa |
146 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
24720834 |
gtagctggcaagctcatatcagctgtggatgaaa |
24720867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 24733406 - 24733275
Alignment:
| Q |
80 |
ccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacataaagatgtcaaaaacagta |
179 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |
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| T |
24733406 |
ccaacaacaccagaaatgtgaaagatatatatagtagctggcaagctcatatcagctgtggatgaaactgtgtgacaacatagagatgtcaaaaacagca |
24733307 |
T |
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| Q |
180 |
acatagttggggatagtggtttaaatgggtta |
211 |
Q |
| |
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||| |||||||||| ||||| |||||||||| |
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| T |
24733306 |
acaaagttggggatgatggttgaaatgggtta |
24733275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 80 - 377
Target Start/End: Original strand, 24648653 - 24648954
Alignment:
| Q |
80 |
ccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaacataaagatgtcaaaaacagta |
179 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| || |||||||| ||||||||| ||| |||||| |||| | ||| ||||||||||||||||| |
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| T |
24648653 |
ccaacaacaccggagatatgaaagatatatatagtagttgggaagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaacagta |
24648752 |
T |
|
| Q |
180 |
acatagttggggatagtggtttaaatgggttattgtttatagcttcatactt-agttcccgctaaagttaccaacaaacccatacgaataaaataagatt |
278 |
Q |
| |
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||| ||| || | |||||| ||||||||| |||||| | ||| ||| || || | ||||||| |||||||||||||| ||||||||||| || |
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| T |
24648753 |
gcattgttatgggtggtggttggaatgggttagtgtttaaaccttgatatttccattgcagctaaaggcaccaacaaacccatcagaataaaataaactt |
24648852 |
T |
|
| Q |
279 |
t---gttgttatgcgtagtcattccgttttgttcggaggaaacaaaaagagaagaaaagtgtatagtattttatattttcgaaagaaacaggatcaagat |
375 |
Q |
| |
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| || ||||||||| ||||| ||||| | |||| |||||||||||||||||||||||||| | | | | |||| |||||||||| ||||||||| |
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| T |
24648853 |
tatagtacttatgcgtaatcattttattttgattggagaaaacaaaaagagaagaaaagtgtatattttacttttttttggaaagaaacaagatcaagat |
24648952 |
T |
|
| Q |
376 |
ca |
377 |
Q |
| |
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|| |
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|
| T |
24648953 |
ca |
24648954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 24694467 - 24694567
Alignment:
| Q |
206 |
gggttattgtttatagcttcatacttagttcccgctaaagttaccaacaaacccatacgaataaaataagatttgttgttatgcgtagtcattccgtttt |
305 |
Q |
| |
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|||||| |||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||| ||| ||||| |||||| ||||| |
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| T |
24694467 |
gggttagtgtttaaagcttcatacttagttgaagctaaagacaccaacaaacccatcagaataaaataagctttgtaattacgcgtaatcattctgtttt |
24694566 |
T |
|
| Q |
306 |
g |
306 |
Q |
| |
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| |
|
|
| T |
24694567 |
g |
24694567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 24656401 - 24656536
Alignment:
| Q |
59 |
atccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagctgacaagctcatatcagctgtggatgaaactgcgtgacaac |
158 |
Q |
| |
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||||| ||||| ||||||||||||| ||||||||||| |||||| || | ||||||| | |||||||| ||||| ||| || |||||| |||||| |
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| T |
24656401 |
atccaaagaagtgtctcacatccaataacaccagaaaagtgaaatatgaacatagtagttaggaagctcatgtcagccatggttgcaactgcatgacaaa |
24656500 |
T |
|
| Q |
159 |
ataaagatgtcaaaaacagtaacatagttggggata |
194 |
Q |
| |
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|| || ||||||||||| |||||| |||||||| |
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| T |
24656501 |
atctagcagtcaaaaacagcaacataagtggggata |
24656536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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