View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_8 (Length: 503)
Name: NF4681_low_8
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Complemental strand, 43627804 - 43627347
Alignment:
| Q |
17 |
atgaagcttgatcccattttggtgatagttggtggcaatgaattgcttaaagatagggctgcaaattatgcaacaagattgaaaggaataggaaaagcca |
116 |
Q |
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| T |
43627804 |
atgaagcttgatcccattttggtgatagttggtggcaatgaattgcttaaagatagggctgcaaattatgcaacaagattgaaaggaataggaaaagaca |
43627705 |
T |
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| Q |
117 |
ttaaatacattgagtttgaggggtgtgaacatgggtttttcacgcatgattcatattcagaaactgcaaaagaggttctacatgtccttaaacaattcat |
216 |
Q |
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| T |
43627704 |
ttaaatacattgagtttgaggggtgtgaacatgggtttttcacgcatgattcatattcagaaactgcgaaagaggttctacatgtccttaaacaattcat |
43627605 |
T |
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| Q |
217 |
gcttcaaacttctacatatccttaagtaatccatatttttagcctatattaaaatagtttgtaggattaaggaaataaataagtcattgttatcggtttg |
316 |
Q |
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| T |
43627604 |
gcttcaaacttctacatatccttaagtaatccatatttttagcctatattaaaacagtttgtaggattaaggaaataaataagtcattgttatcggtttg |
43627505 |
T |
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| Q |
317 |
tagtttttagtggagtttgtagttagctactatttttagtattttgtgttgtggtatataattgtcgattgtataagtttagttttcgagtgtaaaactt |
416 |
Q |
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| T |
43627504 |
tagtttttagtggagtttgtagttagctactatttttagtattttgtgttgtggtatataattgtcgattgtataag-ttagttttcgagtgtaaaactt |
43627406 |
T |
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| Q |
417 |
tataaaattcacaattttaagtgagtgcattgcttatttatcatgtgtcaaaaaactat |
475 |
Q |
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| T |
43627405 |
tataaaattcacaattttaagtgagtgcattgcttatttattatgtgtcaaaaaactat |
43627347 |
T |
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