View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_9 (Length: 491)
Name: NF4681_low_9
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 103 - 472
Target Start/End: Complemental strand, 11856472 - 11856099
Alignment:
| Q |
103 |
actcattccacgcttactcttaggatttaataaatattattttgctcttgggactttgatgcaggcactgatgtagcaggagaggttgtagaggttggac |
202 |
Q |
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| T |
11856472 |
actcattccatgcttactcttaggatataacatagattcttttgctcttgggactttgattcaggcactgatgtatcaggagaggttgtagaggttggac |
11856373 |
T |
|
| Q |
203 |
cgcaagttaacgattttaaagttggagacaaagttattaccaaactcacaaatccagtacttatctc--tttctatcacttctttaggttactgttttta |
300 |
Q |
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| T |
11856372 |
cgcaagtcaacgattttaaagttggagacaaagttattaccaaactcacaaatccagtacttatctcaatttctatcacttctttaggttactgttttta |
11856273 |
T |
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| Q |
301 |
atttttcctat--gctatacaatttcaagtgtaacttgcaacagaatttcatgaatggaatgattttctatgctataatctatactagttttaaaataac |
398 |
Q |
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||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |
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| T |
11856272 |
atttttcctatcatctatgttatttcaagtgtaacttgcaacacaatttcatgaatggaatgattttctattctgtaatctatactagctttaaaataac |
11856173 |
T |
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| Q |
399 |
atgtactcttgcacggtgctcatgcacagatatagtaaaaatggtacgaaacagaattggaaattttgccatgt |
472 |
Q |
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| T |
11856172 |
atgtactcttgcacggagttcatgcacatatatagaaaaaatggtacgaaacagaattggaaattttgccatgt |
11856099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 143 - 389
Target Start/End: Complemental strand, 11842040 - 11841793
Alignment:
| Q |
143 |
tttgctcttgggactttgatgcaggcactgatgtagcaggagaggttgtagaggttggaccgcaagttaacgattttaaagttggagacaaagttattac |
242 |
Q |
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| T |
11842040 |
tttgctcttgggactttgattcaggcactgatgtagctggagaggtggtagaggttggaccacaagtcaaggatttcaaatctggcgacaaagttattgc |
11841941 |
T |
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| Q |
243 |
caaactcacaaatccagtacttatctctttctatcacttctttaggttactgtttttaatttttcctat--gctatacaatttcaagtgtaacttgcaac |
340 |
Q |
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| T |
11841940 |
taaactcacacatcaagtacttatctctttctttcacttccttaggtttctgttttccattcttcatatcatctgtgttaattccagtgtaaattacaac |
11841841 |
T |
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| Q |
341 |
agaatttcatgaatggaatgattttctatgctataatctatactagttt |
389 |
Q |
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| T |
11841840 |
acaatttcatgaatgagatgattttctattctat-atctatactagttt |
11841793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 154 - 354
Target Start/End: Complemental strand, 11431301 - 11431104
Alignment:
| Q |
154 |
gactttgatgcaggcactgatgtagcaggagaggttgtagaggttggaccgcaagttaacgattttaaagttggagacaaagttattaccaaactcacaa |
253 |
Q |
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| T |
11431301 |
gactttgattcaggcaccgatgtagcaggagaggtagtagattttggatcacaagttaaagatttcaaagttggagacaaagttattgctaaactcaaca |
11431202 |
T |
|
| Q |
254 |
atccagtacttatctctttctatcacttctttaggttactgtttttaatttttcctatgctatacaatttcaagtgtaacttgcaacagaatttcatgaa |
353 |
Q |
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||| |||| ||||||||||| | |||||||| ||||| || | | || |||||||| | | ||||||||||||||| |||||||| ||||||||||| |
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| T |
11431201 |
atcaagtaagtatctctttcttttacttctttgtgttac--ttctcatttcttcctatggtct-caatttcaagtgtaaattgcaacacaatttcatgaa |
11431105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 154 - 354
Target Start/End: Original strand, 11564165 - 11564362
Alignment:
| Q |
154 |
gactttgatgcaggcactgatgtagcaggagaggttgtagaggttggaccgcaagttaacgattttaaagttggagacaaagttattaccaaactcacaa |
253 |
Q |
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||||||||| ||||||| ||||||||||||||||| ||||| ||||| | |||||||| ||||| ||||||||||||||||||||| | ||||||| | |
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| T |
11564165 |
gactttgattcaggcaccgatgtagcaggagaggtagtagattttggatcacaagttaaagatttcaaagttggagacaaagttattgctaaactcaaca |
11564264 |
T |
|
| Q |
254 |
atccagtacttatctctttctatcacttctttaggttactgtttttaatttttcctatgctatacaatttcaagtgtaacttgcaacagaatttcatgaa |
353 |
Q |
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||| |||| ||||||||||| | |||||||| ||||| || | | || |||||||| | | ||||||||||||||| |||||||| ||||||||||| |
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| T |
11564265 |
atcaagtaagtatctctttcttttacttctttgtgttac--ttctcatttcttcctatggtct-caatttcaagtgtaaattgcaacacaatttcatgaa |
11564361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 142 - 270
Target Start/End: Complemental strand, 11802146 - 11802018
Alignment:
| Q |
142 |
ttttgctcttgggactttgatgcaggcactgatgtagcaggagaggttgtagaggttggaccgcaagttaacgattttaaagttggagacaaagttatta |
241 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||||||||| |
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| T |
11802146 |
ttttgctcttgggaatttgattcaggcactgatgtagcaggagaggttgtagagattggagaacaagtcaaggattttaaagttggagataaagttattg |
11802047 |
T |
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| Q |
242 |
ccaaactcacaaatccagtacttatctct |
270 |
Q |
| |
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| T |
11802046 |
ctaaactcaacaatctagtacctatctct |
11802018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 11856524 - 11856470
Alignment:
| Q |
15 |
gattatacttatcagggtctcttttctctggaaaccgaaggattatatttatact |
69 |
Q |
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| T |
11856524 |
gattatacttatcagggcctcttttctctggaaaccgaaggattatatttatact |
11856470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 11808106 - 11808055
Alignment:
| Q |
158 |
ttgatgcaggcactgatgtagcaggagaggttgtagaggttggaccgcaagt |
209 |
Q |
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| T |
11808106 |
ttgattcaggcactgatgtagcaggagaggtagtagaagttggaccacaagt |
11808055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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