View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682-Insertion-1 (Length: 585)
Name: NF4682-Insertion-1
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 7 - 585
Target Start/End: Complemental strand, 3568377 - 3567800
Alignment:
| Q |
7 |
aggaagtctaccttgaggaatatgatccgacacattcttcaaggtgaagctaaaggagttggcggaaatatccttggaaggaacatcagacgaagaacat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3568377 |
aggaagtctaccttgaggaatatgatccgacacattcttcaaggtgaagctaaaggagttggcggaaatatccttggaaggaacatcagacgaagaagat |
3568278 |
T |
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| Q |
107 |
ttttcttgattaacatcaacagtcgcagtggacaaaggtgttgtcacttccacatgcttaatgggaacaaaaatttattcatcctccaccttcttctttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568277 |
ttttcttgattaacatcaacagtcgcagtggacaaaggtgttgtcacttccacatgcttaatgggaacaaaaatttattcatcctccaccttcttctttc |
3568178 |
T |
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| Q |
207 |
ctttgtctttgtcgcgagaaggctctgggatgcaaccacttacaatttgaaatgttatgaccaataacataacaatgatgacaaaaaagaggcatgcgct |
306 |
Q |
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| T |
3568177 |
ctttgtctttgtcgcgagaaggctctgggatacaaccacttacaatttgaaatgttatgaccaatgacataacaatgatgacaaaaaagaggcatgcgct |
3568078 |
T |
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| Q |
307 |
catactgcatatctactttgaaagaaaaaccctgccgccccacaaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcata |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568077 |
catactgcatatctactttgaaagaaaaaccctgccgctccacaaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcata |
3567978 |
T |
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| Q |
407 |
atgtttgaatgccctattccgagtcggggcatctataacaatcggagtacccacgacacttgctatttccatcaacgtgcgttcccaccgatgttcctga |
506 |
Q |
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| T |
3567977 |
atgtttgaaggccctattccgagtcggggcatctataacaatcggagtacccacgacacttgctatttccatcaacgtgcgttcccaccaatattcctga |
3567878 |
T |
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| Q |
507 |
ggcaacacaaccagcctaatcccaaagtgaagcatgtgtctatttatgagaattgtggttaaaatcctttgtccattga |
585 |
Q |
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| T |
3567877 |
ggcaacacaaccagcctaat-ccaaagtgaagcatgtgtctatttatgagaattgtggttaaaatcctttgtccattga |
3567800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 466
Target Start/End: Original strand, 32239235 - 32239357
Alignment:
| Q |
346 |
ccacaaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatgtttgaat--gccctattccgagtcggggcatctata |
443 |
Q |
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| T |
32239235 |
ccacaagaatttcatcataggctcttttagataagtcaatgtccaccaaaattctcgcatagtgtctgaattagccctatttcgtgtcggggcatctaaa |
32239334 |
T |
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| Q |
444 |
acaatcggagtacccacgacact |
466 |
Q |
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| T |
32239335 |
tctatcggagtaccaacaacact |
32239357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 346 - 482
Target Start/End: Complemental strand, 24372011 - 24371875
Alignment:
| Q |
346 |
ccacaaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatgtttgaatgccctattccgagtcggggcatctataac |
445 |
Q |
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||||||| |||||||||| | | |||||| | |||||| |||||||||||| |||||||||| |||| |||||||| |||||||||||||||| | |
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| T |
24372011 |
ccacaagaatttcatcatcggccctcttagacaagtcaatgtccaccaaaatttatgcataatgtctgaaggccctattacgagtcggggcatctagggc |
24371912 |
T |
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| Q |
446 |
aatcggagtacccacgacacttgctatttccatcaac |
482 |
Q |
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| T |
24371911 |
aatcagagtacccaccgcacttgctatttccttcaac |
24371875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 406
Target Start/End: Original strand, 14385152 - 14385290
Alignment:
| Q |
268 |
caataacataacaatgatgacaaaaaagaggcatgcgctcatactgcatatctactttgaaagaaaaaccctgccgccccacaaggatttcatcatacac |
367 |
Q |
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|||| |||||||||||||||||||| | ||| | ||||| |||| ||||| || |||| |||||||| ||| | ||||||||||||||||| || |
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| T |
14385152 |
caatgacataacaatgatgacaaaacaaaggacgtctttcatattgcacttctacgttaaaagcaaaaccctcccgttcaacaaggatttcatcataaac |
14385251 |
T |
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| Q |
368 |
acgcttagataggtcaatatccaccaaaattcgtgcata |
406 |
Q |
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| T |
14385252 |
ccgcttcgataagtcaatgtccacaagaatgcgtgcata |
14385290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 585
Target Start/End: Original strand, 45270331 - 45270567
Alignment:
| Q |
348 |
acaaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatgtttgaatgccctattccgagtcggggcatctataacaa |
447 |
Q |
| |
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||||| ||||| ||||| || ||||| |||| ||| || |||| | ||| |||||||| ||| |||||| ||||| | ||||| |||| ||| || |
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| T |
45270331 |
acaagaatttcgtcatagacccgctttgataagtcgatgtccataagaatgcgtgcatagtgtccgaatgctctatttcctgtcggcccatcaatagaaa |
45270430 |
T |
|
| Q |
448 |
tcggagtacccacgacacttgctatttccatcaacgtgcgttcccaccgatgttcctgaggcaacacaaccagcctaatcccaaagtgaagcatgtgtct |
547 |
Q |
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| |||||||||||||||||||||||||| |||| || | || |||| || ||||||||||||| |||| || || || ||| ||||| |||||||||| |
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| T |
45270431 |
ttggagtacccacgacacttgctatttctttcaaagttctctcacaccaatattcctgaggcaactcaacaagtctgat-ccatagtgatgcatgtgtct |
45270529 |
T |
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| Q |
548 |
atttatgagaattgtggttaaaatcctttgtccattga |
585 |
Q |
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| T |
45270530 |
gtgcctgagagttatgattaaaatccttcgtccattga |
45270567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 435
Target Start/End: Complemental strand, 14679 - 14624
Alignment:
| Q |
380 |
gtcaatatccaccaaaattcgtgcataatgtttgaatgccctattccgagtcgggg |
435 |
Q |
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|||||| ||||||| |||||||||||||||| |||| |||||||| || ||||||| |
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| T |
14679 |
gtcaatgtccaccagaattcgtgcataatgtctgaaggccctattacgtgtcgggg |
14624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 11483104 - 11483044
Alignment:
| Q |
349 |
caaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatg |
409 |
Q |
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|||||||||||||| | |||||||| |||| |||||| |||| |||||| | ||||||||| |
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| T |
11483104 |
caaggatttcatcaaaaacacgctttgataagtcaatgtccaacaaaatccttgcataatg |
11483044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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