View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4682-Insertion-2 (Length: 545)
Name: NF4682-Insertion-2
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682-Insertion-2 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 7 - 545
Target Start/End: Original strand, 44225066 - 44225604
Alignment:
| Q |
7 |
agttagcttgaagatgtaaacaagcgaattccttttcatgagcaagtactctcttgagaagttagcctttgaaagctccgtcttgttgagaccatactct |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44225066 |
agttagcttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactct |
44225165 |
T |
|
| Q |
107 |
ttggtggtcaaagcagctggatggctcttcgtcttgtcaaatggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaatgcctcag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44225166 |
ttggtggtcaaagcagctggatggctcttcgtcttgtcaaatggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaacgcctcag |
44225265 |
T |
|
| Q |
207 |
cgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttacttcttgaagaaagtcagcggc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
44225266 |
cgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttttggaagttacttcttgaagaaagtcagcagc |
44225365 |
T |
|
| Q |
307 |
acctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44225366 |
acctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagaaattaagata |
44225465 |
T |
|
| Q |
407 |
atgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44225466 |
atgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaa |
44225565 |
T |
|
| Q |
507 |
tctgaaaagtagtggaactgtccagcccagtagaaattt |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44225566 |
tctgaaaagtagtggaactgtccagcccagtagaaattt |
44225604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 7 - 544
Target Start/End: Original strand, 44235880 - 44236417
Alignment:
| Q |
7 |
agttagcttgaagatgtaaacaagcgaattccttttcatgagcaagtactctcttgagaagttagcctttgaaagctccgtcttgttgagaccatactct |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44235880 |
agttagcttgaagatgtaaacaaaggaatttcttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactct |
44235979 |
T |
|
| Q |
107 |
ttggtggtcaaagcagctggatggctcttcgtcttgtcaaatggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaatgcctcag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44235980 |
ttggtggtcaaagcagctggatggctcttcgtcttgtcaaatggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaacgcctcag |
44236079 |
T |
|
| Q |
207 |
cgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttacttcttgaagaaagtcagcggc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44236080 |
cgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttttggaagttacttcttgaagaaagtcagcggc |
44236179 |
T |
|
| Q |
307 |
acctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44236180 |
acctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagata |
44236279 |
T |
|
| Q |
407 |
atgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44236280 |
atgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaa |
44236379 |
T |
|
| Q |
507 |
tctgaaaagtagtggaactgtccagcccagtagaaatt |
544 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44236380 |
tctgaaaagttgtggaactgtccagcccagtagaaatt |
44236417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 7 - 545
Target Start/End: Original strand, 44212905 - 44213443
Alignment:
| Q |
7 |
agttagcttgaagatgtaaacaagcgaattccttttcatgagcaagtactctcttgagaagttagcctttgaaagctccgtcttgttgagaccatactct |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44212905 |
agttagcttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaaaagctccgtcttgttgagaccatactct |
44213004 |
T |
|
| Q |
107 |
ttggtggtcaaagcagctggatggctcttcgtcttgtcaaatggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaatgcctcag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| | |
|
|
| T |
44213005 |
ttggtggtcaaagcagctggatggctcttcgtcttgtcaaatggtatggaaagctcctcagcaagtttcccaccaatatggaatgattgaaatgcctcgg |
44213104 |
T |
|
| Q |
207 |
cgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttacttcttgaagaaagtcagcggc |
306 |
Q |
| |
|
| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| | |
|
|
| T |
44213105 |
caaattgagtaacagttacatatcggtatggttgatctctgcgcacccagtactgtgcttgatcctttttggatgttacttcttgaagaaaatcagcaac |
44213204 |
T |
|
| Q |
307 |
acctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44213205 |
acctttcctttcaggacatttgaaacccatagattcgaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagatattaagata |
44213304 |
T |
|
| Q |
407 |
atgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtgaacatattgtctcagagagctcacaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44213305 |
atgtcatcaaaaagatcataagtctcaggtgctggctggagcagtgatataactgcagtgccattcataatgtgaacatattgcctcagagagctcacaa |
44213404 |
T |
|
| Q |
507 |
tctgaaaagtagtggaactgtccagcccagtagaaattt |
545 |
Q |
| |
|
| |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
44213405 |
tttgaaaagttgtggaactgtccagtccagtagaaattt |
44213443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 282 - 545
Target Start/End: Complemental strand, 2884481 - 2884218
Alignment:
| Q |
282 |
ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
381 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||||||||||||||| | || ||||||||| ||||||| || |||||| || || ||||| || |
|
|
| T |
2884481 |
ttacttcttgaagaaagtccgctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac |
2884382 |
T |
|
| Q |
382 |
aacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtga |
481 |
Q |
| |
|
|| ||| |||||||| || | ||||||||||||||||| |||||||||||||||||||||||||| | || ||||||| || ||||| | ||||||| |
|
|
| T |
2884381 |
aatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctcaggtgctggttggagtaaagagataactgtggttccattaagaatgtga |
2884282 |
T |
|
| Q |
482 |
acatattgtctcagagagctcacaatctgaaaagtagtggaactgtccagcccagtagaaattt |
545 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||| ||||||||||||| |||||||| |||| |
|
|
| T |
2884281 |
acatattgctgaagagatctcacaatttggaaagttgtggaactgtccaaaccagtagatattt |
2884218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 282 - 545
Target Start/End: Original strand, 2900483 - 2900746
Alignment:
| Q |
282 |
ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
381 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| ||||||||||||||||| | || |||||||||||||||||||| ||| || || || || || || |
|
|
| T |
2900483 |
ttacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaactgattcaaaaaagtcaagaacatgttcacgcggtccttgatagac |
2900582 |
T |
|
| Q |
382 |
aacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtga |
481 |
Q |
| |
|
|| ||| ||||| || || | ||||||||||||||||| ||||||||||| ||||||||||| |||| || ||||||||||| ||||| | ||| ||| |
|
|
| T |
2900583 |
aatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctggttgaagcaaagagataactgcagttccattaagaatatga |
2900682 |
T |
|
| Q |
482 |
acatattgtctcagagagctcacaatctgaaaagtagtggaactgtccagcccagtagaaattt |
545 |
Q |
| |
|
|||||||| || ||||| ||||||| || ||||| ||||||||||||| |||||||| |||| |
|
|
| T |
2900683 |
acatattgcctaagagatttcacaatttggaaagttgtggaactgtccaagccagtagatattt |
2900746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 2884858 - 2884598
Alignment:
| Q |
13 |
cttgaagatgtaaacaagcgaattccttttcatgagcaagtactctcttgagaagttagcctttgaaagctccgtcttgttgagaccatactctttggtg |
112 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||| | || || ||||||| | ||| |||| ||| || |
|
|
| T |
2884858 |
cttgaagatgtaaacaaaggaatttcttttcataagcaaatactctcttgagaagttagcctttaacagttctttcttgttaacaccgtactttttagtt |
2884759 |
T |
|
| Q |
113 |
gtcaaagcagctggatggctcttcgtcttgtcaaatggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaatgcctcagcgaatt |
212 |
Q |
| |
|
|| || || |||||||| |||| | |||||||||||| | | |||||| || | |||||| |||| |||| | ||||||||||||||||| |||| |
|
|
| T |
2884758 |
gttaatgctgctggatgattcttagacttgtcaaatggaattgcaagctcatctcctgttttccttccaacatggtatgattgaaatgcctcagcaaatt |
2884659 |
T |
|
| Q |
213 |
gagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctt |
273 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| ||||| ||||| |||||||||| |
|
|
| T |
2884658 |
gagtaacagttacaaacctgtatggtttttctctgtcaacccaatactgctcttgatcctt |
2884598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 282 - 525
Target Start/End: Complemental strand, 2874487 - 2874244
Alignment:
| Q |
282 |
ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
381 |
Q |
| |
|
||||||||||||| || ||||| | |||||||| ||||||||||||||||| || | ||||||||| |||||||||| ||| || || || ||||| || |
|
|
| T |
2874487 |
ttacttcttgaaggaaatcagcaacgcctttcctctcaggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaac |
2874388 |
T |
|
| Q |
382 |
aacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttggagcagtgatataactgcagtgccattcataatgtga |
481 |
Q |
| |
|
|| || |||||||| | | ||||||||||||||||| ||||||||||| |||||||| || |||| ||| |||| |||||| |||| | ||| | | |
|
|
| T |
2874387 |
aatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataa |
2874288 |
T |
|
| Q |
482 |
acatattgtctcagagagctcacaatctgaaaagtagtggaact |
525 |
Q |
| |
|
|||||||| || ||||| ||||||| ||||||| |||||||| |
|
|
| T |
2874287 |
acatattgcctaagagatttcacaatttgaaaagctgtggaact |
2874244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 2899702 - 2899962
Alignment:
| Q |
13 |
cttgaagatgtaaacaagcgaattccttttcatgagcaagtactctcttgagaagttagcctttgaaagctccgtcttgttgagaccatactctttggtg |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||| | || || ||||||| | ||| |||| ||| || |
|
|
| T |
2899702 |
cttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaacagttctttcttgttaacaccgtactttttagtt |
2899801 |
T |
|
| Q |
113 |
gtcaaagcagctggatggctcttcgtcttgtcaaatggtacggaaagctcctcagcaagtttcctaccaatatggaaggattgaaatgcctcagcgaatt |
212 |
Q |
| |
|
|| || || |||||||| |||| | |||||||||||| | | |||||| || |||||| |||| |||| | ||||||||||||||||| |||| |
|
|
| T |
2899802 |
gttaatgctgctggatgattcttagacttgtcaaatggaattgcaagctcatctcttgttttccttccaacatggtatgattgaaatgcctcagcaaatt |
2899901 |
T |
|
| Q |
213 |
gagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctt |
273 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||| ||||| ||||| |||||||||| |
|
|
| T |
2899902 |
gagtaacagttaaaaacctgtatggtttttctctgtcaacccaatactgctcttgatcctt |
2899962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 2874806 - 2874718
Alignment:
| Q |
197 |
aatgcctcagcgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttac |
285 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| || ||||||| ||||||| ||| ||| || || ||||||||||||| |||||||| |
|
|
| T |
2874806 |
aatgcctctgcaaattgagtaactgttacaaacctatatggttcatctctgtgcatccaatattgctcttgatcctttcttgaagttac |
2874718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 2874971 - 2874853
Alignment:
| Q |
32 |
gaattccttttcatgagcaagtactctcttgagaagttagcctttgaaagctccgtcttgttgagaccatactctttggtggtcaaagcagctggatggc |
131 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||| |||||||||| | || ||| ||||||| | |||||||| ||| || || || || |||||||| |
|
|
| T |
2874971 |
gaatttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacaccatactttttagttgttaatgctgctggatgat |
2874872 |
T |
|
| Q |
132 |
tcttcgtcttgtcaaatgg |
150 |
Q |
| |
|
| || | |||||||||||| |
|
|
| T |
2874871 |
tatttgacttgtcaaatgg |
2874853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 444
Target Start/End: Original strand, 42135518 - 42135686
Alignment:
| Q |
276 |
tggaagttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatg |
375 |
Q |
| |
|
|||| ||||||||||| | ||| ||||| | ||||| ||| ||||||||||||||| || ||||||||||| | | |||| |||||| || || || |
|
|
| T |
42135518 |
tggatgttacttcttgtaaaaaatcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactgtaacacattttcgcgtggtccttg |
42135617 |
T |
|
| Q |
376 |
gtatacaacttggccatcagagattaagataatgtcatcaaaaagatcataagtctcaggtgctggttg |
444 |
Q |
| |
|
|||||||| ||| || || || | || ||||||||||||||| || ||| | ||||| ||||||||||| |
|
|
| T |
42135618 |
gtatacaatttgaccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctggtgctggttg |
42135686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 437
Target Start/End: Original strand, 39550630 - 39550759
Alignment:
| Q |
308 |
cctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggccatcagagattaagataa |
407 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| ||| ||||| ||||| || | || ||||| || ||||||| || || | |||||||| || |||| |
|
|
| T |
39550630 |
cctttcctatcaggacatttaaaaccaattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataa |
39550729 |
T |
|
| Q |
408 |
tgtcatcaaaaagatcataagtctcaggtg |
437 |
Q |
| |
|
|||| |||||||||| |||||||| |||| |
|
|
| T |
39550730 |
tgtcgtcaaaaagattgtaagtctctggtg |
39550759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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