View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4682-Insertion-3 (Length: 508)
Name: NF4682-Insertion-3
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682-Insertion-3 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr1 (10 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 508
Target Start/End: Original strand, 16231799 - 16232297
Alignment:
| Q |
8 |
ggttcatccttggagtttgaggcaacatagcctcgcataagatgtgcttatcagacaatgtcttgttcgtaaggcgaaatcccacaatatcaccaggaag |
107 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
16231799 |
ggttcatcctcggagtttgaggctacatagcctcgcatgagatt--cttatcagacaatgtcttgttagtaaggcgaaatccaacaatatcagcaggaag |
16231896 |
T |
|
| Q |
108 |
ggcctcactaatgttttcctgaaacttctgaatagacttgaccccagattgcagcttagtaggagcaaaagtcagtaccattccgggctttaatacccca |
207 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16231897 |
ggcctcattaatgttttcctgaaacttctgaatagacttgaccccagattgtagcttagtaggggcaaaagtcagtaccattccgggctttaatacccca |
16231996 |
T |
|
| Q |
208 |
gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| || | |
|
|
| T |
16231997 |
gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggaagtcgcagaggcttgccttcgggcctcttaggctcgc |
16232096 |
T |
|
| Q |
308 |
tgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaac |
407 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16232097 |
tgatttggtcaatagcttcaacaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcacttaaaaccagagatgggaac |
16232196 |
T |
|
| Q |
408 |
aaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcatatctgtccttagagtatttcggtgtagtg |
507 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16232197 |
aaatggaatatcatcagcgttataaccaatcctcgtcaaagcgggtgaaactcccttcacaattacttcatatctgtccttggagtatttcggtgtagtg |
16232296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 504
Target Start/End: Original strand, 34690458 - 34690952
Alignment:
| Q |
8 |
ggttcatccttggagtttgaggcaacatagcctcgcataagatgtgcttatcagacaatgtcttgttcgtaaggcgaaatcccacaatatcaccaggaag |
107 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||| |||||| |||||| |||||| |||| || |||||| | ||||||||||||||||||||||| |
|
|
| T |
34690458 |
ggttcatacttggagtctgacgcaacatagcctcgcctaagatt--cttatcggacaatttcttatttgtaaggtgcaatcccacaatatcaccaggaag |
34690555 |
T |
|
| Q |
108 |
ggcctcactaatgttttcctgaaacttctgaatagacttgaccccagattgcagcttagtaggagcaaaagtcagtaccattccgggctttaatacccca |
207 |
Q |
| |
|
||||||||| |||||||| ||| | |||| | |||||| || |||||||||||| ||| || ||||||||||| |||||||| || || || || ||| |
|
|
| T |
34690556 |
ggcctcactgatgttttcatgatgcatctgcacagacttaactccagattgcagcccagttggggcaaaagtcagcaccattccaggtttcaacacacca |
34690655 |
T |
|
| Q |
208 |
gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcac |
307 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| || ||| || |||||||||| |||||||||||| || |
|
|
| T |
34690656 |
gtctcaacacgtccgacaggtacagttccaacacctccaatcttgtagacatgttgaagtggtagtctcaaaggcttgcctgaaggcctcttaggctcgt |
34690755 |
T |
|
| Q |
308 |
tgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaac |
407 |
Q |
| |
|
||||||||||| |||||||||||||||||| || || ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
34690756 |
cgatttggtcaagagcttcaagaagggtaggaccttcgtaccagtcaaggttagtcgagcgctcaatgatgttatctcccttataaccagagatgggaac |
34690855 |
T |
|
| Q |
408 |
aaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcatatctgtccttagagtatttcggtgta |
504 |
Q |
| |
|
||||||||| | ||| |||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||| || ||||| |||||||| |||||| |
|
|
| T |
34690856 |
aaatggaattttatctgtgttataaccaatcctcatcaaagcgggtgaaattcccttcacaattagttcatacctatccttggagtatttgggtgta |
34690952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 504
Target Start/End: Original strand, 34712870 - 34713364
Alignment:
| Q |
8 |
ggttcatccttggagtttgaggcaacatagcctcgcataagatgtgcttatcagacaatgtcttgttcgtaaggcgaaatcccacaatatcaccaggaag |
107 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||| |||||| |||||| |||||| |||| || |||||| | ||||||||||||||||||||||| |
|
|
| T |
34712870 |
ggttcatacttggagtctgacgcaacatagcctcgcctaagatt--cttatcggacaatttcttatttgtaaggtgcaatcccacaatatcaccaggaag |
34712967 |
T |
|
| Q |
108 |
ggcctcactaatgttttcctgaaacttctgaatagacttgaccccagattgcagcttagtaggagcaaaagtcagtaccattccgggctttaatacccca |
207 |
Q |
| |
|
||||||||| |||||||| ||| | |||| | |||||| || |||||||||||| ||| || ||||||||||| |||||||| || || || || ||| |
|
|
| T |
34712968 |
ggcctcactgatgttttcatgatgcatctgcacagacttaactccagattgcagcccagttggggcaaaagtcagcaccattccaggtttcaacacacca |
34713067 |
T |
|
| Q |
208 |
gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcac |
307 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| || ||| || |||||||||| |||||||||||| || |
|
|
| T |
34713068 |
gtctcaacacgtccgacaggtacagttccaacacctccaatcttgtagacatgttgaagtggtagtctcaaaggcttgcctgaaggcctcttaggctcgt |
34713167 |
T |
|
| Q |
308 |
tgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaac |
407 |
Q |
| |
|
||||||||||| |||||||||||||||||| || || ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
34713168 |
cgatttggtcaagagcttcaagaagggtaggaccttcgtaccagtcaaggttagtcgagcgctcaatgatgttatctcccttataaccagagatgggaac |
34713267 |
T |
|
| Q |
408 |
aaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcatatctgtccttagagtatttcggtgta |
504 |
Q |
| |
|
||||||||| | ||| |||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||| || ||||| |||||||| |||||| |
|
|
| T |
34713268 |
aaatggaattttatctgtgttataaccaatcctcatcaaagcgggtgaaattcccttcacaattagttcatacctatccttggagtatttgggtgta |
34713364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 314 - 415
Target Start/End: Original strand, 33860757 - 33860858
Alignment:
| Q |
314 |
ggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaacaaatgg |
413 |
Q |
| |
|
|||||| ||||||||||||||| || || | ||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33860757 |
ggtcaagagcttcaagaagggtgggacccttgtaccagtcaagattagtagagcgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgg |
33860856 |
T |
|
| Q |
414 |
aa |
415 |
Q |
| |
|
|| |
|
|
| T |
33860857 |
aa |
33860858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 9e-62; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 209 - 508
Target Start/End: Complemental strand, 38138329 - 38138030
Alignment:
| Q |
209 |
tctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcact |
308 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||| || | | | ||||||||| || |||||||||| || | |
|
|
| T |
38138329 |
tctcaacccgtcccacaggcacagttccaattcctccaatcttgtagacatcctgaagtggtaatcggagaggcttgtctaatagcctcttaggctcctt |
38138230 |
T |
|
| Q |
309 |
gatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaaca |
408 |
Q |
| |
|
||||||||||| ||||||||||||||| || || | |||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
38138229 |
gatttggtcaagagcttcaagaagggtgggacccttataccagtcaaggttagtagagcgttcaatgatgttatctccctcaaaaccagagatgggaaca |
38138130 |
T |
|
| Q |
409 |
aatggaatatcatcagtgtcataaccaatcctc-atcaaaccgggtgaaactcccttcacaattacttcatatctgtccttagagtatttcggtgtagtg |
507 |
Q |
| |
|
|||||||| ||||| || ||| |||| | || |||||| |||||||| | ||||||||||| ||||||| || ||||| |||||||| ||||||||| |
|
|
| T |
38138129 |
aatggaatttcatctaggttatagccaa-catcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagtatttgggtgtagtg |
38138031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 165 - 506
Target Start/End: Original strand, 43044767 - 43045108
Alignment:
| Q |
165 |
agtaggagcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga |
264 |
Q |
| |
|
|||||| |||||||| | |||||||| || |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
43044767 |
agtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattcctccaatcttgtagacatcctga |
43044866 |
T |
|
| Q |
265 |
aggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtag |
364 |
Q |
| |
|
|| || ||| | || |||||| || |||||||||||| ||| |||||||||||| || ||||||||||| || || | |||||||||||||| |||| |
|
|
| T |
43044867 |
agtggtagtcggaggggcttgtctgaaggcctcttaggctcattgatttggtcaagggcctcaagaagggttggacccttgtaccagtcaaggtttgtag |
43044966 |
T |
|
| Q |
365 |
agcgctcaacgatgttatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactccctt |
464 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||||||||||||| | || | || ||| |||| | || ||||| || ||||||| |||| |
|
|
| T |
43044967 |
agcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttcctt |
43045066 |
T |
|
| Q |
465 |
cacaattacttcatatctgtccttagagtatttcggtgtagt |
506 |
Q |
| |
|
||||||| | |||||||| |||| ||||| || |||||||| |
|
|
| T |
43045067 |
cacaatttcatcatatctacccttggagtacttgggtgtagt |
43045108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 165 - 506
Target Start/End: Complemental strand, 43067224 - 43066883
Alignment:
| Q |
165 |
agtaggagcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga |
264 |
Q |
| |
|
|||||| |||||||| | |||||||| || |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
43067224 |
agtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattcctccaatcttgtagacatcttga |
43067125 |
T |
|
| Q |
265 |
aggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtag |
364 |
Q |
| |
|
|| || ||| | || |||||| || |||||||||||| || |||||||||||| || ||||||||||| || || | |||||||||||||| |||| |
|
|
| T |
43067124 |
agtggtagtcggaggggcttgtctgaaggcctcttaggctcgttgatttggtcaagggcctcaagaagggttggacccttgtaccagtcaaggtttgtag |
43067025 |
T |
|
| Q |
365 |
agcgctcaacgatgttatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactccctt |
464 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||||||||||||| | || | || ||| |||| | || ||||| || ||||||| |||| |
|
|
| T |
43067024 |
agcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttcctt |
43066925 |
T |
|
| Q |
465 |
cacaattacttcatatctgtccttagagtatttcggtgtagt |
506 |
Q |
| |
|
||||||| | |||||||| |||| ||||| || |||||||| |
|
|
| T |
43066924 |
cacaatttcatcatatctacccttggagtacttgggtgtagt |
43066883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 165 - 506
Target Start/End: Original strand, 43083611 - 43083952
Alignment:
| Q |
165 |
agtaggagcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga |
264 |
Q |
| |
|
|||||| |||||||| | |||||||| || |||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
43083611 |
agtaggggcaaaagtgataaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattcctccaatcttgtagacatcttga |
43083710 |
T |
|
| Q |
265 |
aggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtag |
364 |
Q |
| |
|
|| || ||| | || |||||| || |||||||||||| || |||||||||||| || ||||||||||| || || | |||||||||||||| |||| |
|
|
| T |
43083711 |
agtggtagtcggaggggcttgtctgaaggcctcttaggctcgttgatttggtcaagtgcctcaagaagggttggacccttgtaccagtcaaggtttgtag |
43083810 |
T |
|
| Q |
365 |
agcgctcaacgatgttatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactccctt |
464 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||||||||||||| | || | || ||| |||| | || ||||| || ||||||| |||| |
|
|
| T |
43083811 |
agcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttcctt |
43083910 |
T |
|
| Q |
465 |
cacaattacttcatatctgtccttagagtatttcggtgtagt |
506 |
Q |
| |
|
||||||| | |||||||| |||| ||||| || |||||||| |
|
|
| T |
43083911 |
cacaatttcatcatatctacccttggagtacttgggtgtagt |
43083952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 165 - 508
Target Start/End: Original strand, 3300501 - 3300844
Alignment:
| Q |
165 |
agtaggagcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga |
264 |
Q |
| |
|
|||||| |||||||| | |||||||| || |||| || |||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
3300501 |
agtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctga |
3300600 |
T |
|
| Q |
265 |
aggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtag |
364 |
Q |
| |
|
|| || || | || |||||| || ||||||||||| || |||||||||||| ||| |||||||||||||| || | ||||||||||| || |||| |
|
|
| T |
3300601 |
agcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtag |
3300700 |
T |
|
| Q |
365 |
agcgctcaacgatgttatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactccctt |
464 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||||||||||||| | || | || ||| |||| | || ||||| || ||||||| |||| |
|
|
| T |
3300701 |
agcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttcctt |
3300800 |
T |
|
| Q |
465 |
cacaattacttcatatctgtccttagagtatttcggtgtagtgg |
508 |
Q |
| |
|
||||||| ||||||| || |||| ||||| || |||||||||| |
|
|
| T |
3300801 |
cacaatttcttcatacctacccttcgagtacttaggtgtagtgg |
3300844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 172 - 417
Target Start/End: Complemental strand, 45984202 - 45983957
Alignment:
| Q |
172 |
gcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggca |
271 |
Q |
| |
|
||||||||||| |||||||| || || || ||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||||| || | |
|
|
| T |
45984202 |
gcaaaagtcagcaccattccagggttcaaggaaccagtctcaacacgtcccacaggcacagttccgattcctccaatcttgtagacatcctgaagtggta |
45984103 |
T |
|
| Q |
272 |
gttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctc |
371 |
Q |
| |
|
| ||||||||| || |||||| |||| || |||||||||||||||||||||||||||| || || | ||||| ||||| |||||||||||||| |
|
|
| T |
45984102 |
ttctgagaggcttgtctgatggcctcataggctcgttgatttggtcaatagcttcaagaagggttggacccttgtaccaatcaagattagtagagcgctc |
45984003 |
T |
|
| Q |
372 |
aacgatgttatctcccttaaaaccagagatgggaacaaatggaata |
417 |
Q |
| |
|
|| | ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
45984002 |
aatcaagttatctccctcaaaaccagagatgggaacaattggaata |
45983957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 208 - 422
Target Start/End: Original strand, 50912189 - 50912403
Alignment:
| Q |
208 |
gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcac |
307 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| ||||||||||||||||| |||||| || | | | |||||| || | || || ||||| || |
|
|
| T |
50912189 |
gtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtggtaatcggagaggcatgtgtgatggtctattaggctcct |
50912288 |
T |
|
| Q |
308 |
tgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaac |
407 |
Q |
| |
|
||||||| |||| |||||||| |||||| || || | |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
50912289 |
tgatttgatcaagagcttcaataagggtgggacctttgtaccagtcaaggttagtagagcgctcaatgatgttatctccctcaaaaccagagatgggaat |
50912388 |
T |
|
| Q |
408 |
aaatggaatatcatc |
422 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
50912389 |
aaacggaatttcatc |
50912403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 416
Target Start/End: Complemental strand, 43077071 - 43076828
Alignment:
| Q |
165 |
agtaggagcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga |
264 |
Q |
| |
|
|||||| |||||||||| |||||||| || || || || ||||||||||||||| ||||||||||||||||||| |||| || ||||||||||| | |
|
|
| T |
43077071 |
agtaggggcaaaagtcaccaccattccaggtttcaagacaccagtctcaacacgtgccacaggtacagttccaattcctctaaacttgtagacattgt-- |
43076974 |
T |
|
| Q |
265 |
aggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtag |
364 |
Q |
| |
|
||| | || ||||| || |||||||||||| || |||||||||||| || |||||||||| || || | ||||||| |||||| |||| |
|
|
| T |
43076973 |
------agtcggaggtgcttgtctgaaggcctcttaggctcgttgatttggtcaagggccccaagaagggttggacccttgtaccagttaaggtttgtag |
43076880 |
T |
|
| Q |
365 |
agcgctcaacgatgttatctcccttaaaaccagagatgggaacaaatggaat |
416 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43076879 |
agcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaat |
43076828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 401
Target Start/End: Complemental strand, 7891458 - 7891229
Alignment:
| Q |
172 |
gcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggca |
271 |
Q |
| |
|
||||||||||| |||||||| || || || | |||| |||||| ||||||||||| ||| ||||||| ||||||||||||||||||| ||||| || | |
|
|
| T |
7891458 |
gcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacatcttgaagtggta |
7891359 |
T |
|
| Q |
272 |
gttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctc |
371 |
Q |
| |
|
| | |||||| || | ||||||||| |||| |||||||| ||||||||||||||| || || ||||| |||||||||| ||||||||| |
|
|
| T |
7891358 |
atcggagaggcctgaatattaacctcttaggccttctgaattggtcaagagcttcaagaagggtgggacccgtgtaccaatcaaggttagaagagcgctc |
7891259 |
T |
|
| Q |
372 |
aacgatgttatctcccttaaaaccagagat |
401 |
Q |
| |
|
|| |||||||||||||| |||||||||| |
|
|
| T |
7891258 |
aatgatgttatctccctcgtaaccagagat |
7891229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 416
Target Start/End: Complemental strand, 40035063 - 40034955
Alignment:
| Q |
308 |
tgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaac |
407 |
Q |
| |
|
|||||||||| |||||||||| |||||| || || | ||||| |||||||||||||||||||||| |||||| ||||| ||||||||| ||||||| |
|
|
| T |
40035063 |
tgatttggtcgatagcttcaaaaagggtgggacctttgtaccaatcaaggttagtagagcgctcaatgatgttttctccaacaaaaccagatatgggaat |
40034964 |
T |
|
| Q |
408 |
aaatggaat |
416 |
Q |
| |
|
||||||||| |
|
|
| T |
40034963 |
aaatggaat |
40034955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 205 - 416
Target Start/End: Original strand, 4231272 - 4231483
Alignment:
| Q |
205 |
ccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggtt |
304 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| || ||| | || |||||| || ||||||||||| | |
|
|
| T |
4231272 |
ccagtctcaacacgtcccacaggaacagttccaattcctccaatcttgtagacatcctgaagaggtagtcggaggggcttgtctgatggcctcttaggct |
4231371 |
T |
|
| Q |
305 |
cactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatggg |
404 |
Q |
| |
|
|| ||||||| |||| ||| |||||||| || || || | ||||||||||| || ||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
4231372 |
cattgatttgatcaagagcctcaagaagtgttggacccttgtaccagtcaagatttgtagagcgctcaatcatgttatctccctcaaaaccagagatggg |
4231471 |
T |
|
| Q |
405 |
aacaaatggaat |
416 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4231472 |
aacaaatggaat |
4231483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 19964871 - 19964822
Alignment:
| Q |
353 |
caaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatg |
402 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||| || ||||||||||||| |
|
|
| T |
19964871 |
caaggttagtagagggctcaaccaagttatctcgctcaaaaccagagatg |
19964822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 208 - 412
Target Start/End: Original strand, 4619499 - 4619703
Alignment:
| Q |
208 |
gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcac |
307 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| ||||||||||||||||||| | |||| || | | | ||||||||| | ||||| ||||| || |
|
|
| T |
4619499 |
gtctcaacacatcccacaggcacagttccaattcctccaatcttgtagacatcccgaagtggtaatcggagaggcttgtttgatggcctattaggctcgt |
4619598 |
T |
|
| Q |
308 |
tgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaac |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||| || || || ||||||||||| |||| ||| ||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
4619599 |
tgatttggtcaagagcttcaagaagggtgggaccctcgtaccagtcaagattagaagaacgctcaatcaagttatctccctcaaaaccagagatgggaac |
4619698 |
T |
|
| Q |
408 |
aaatg |
412 |
Q |
| |
|
||||| |
|
|
| T |
4619699 |
aaatg |
4619703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 172 - 401
Target Start/End: Original strand, 1846263 - 1846492
Alignment:
| Q |
172 |
gcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggca |
271 |
Q |
| |
|
||||||||||| |||||||| || || || | |||| |||||| ||||||||||| ||| ||||||| ||||||||||||||||||| ||||| || | |
|
|
| T |
1846263 |
gcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacatcttgaagtggta |
1846362 |
T |
|
| Q |
272 |
gttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctc |
371 |
Q |
| |
|
| | |||||| || | ||||||||| ||||||||||||| ||||||||||||||| || || |||||||||||||||| |||| |||| |
|
|
| T |
1846363 |
atcggagaggcctgaatattaacctcttaggccttctgatttggtcaagagcttcaagaagggtgggacccgtgtaccagtcaaggttagaagagtgctc |
1846462 |
T |
|
| Q |
372 |
aacgatgttatctcccttaaaaccagagat |
401 |
Q |
| |
|
|| |||||||||||||| |||||||||| |
|
|
| T |
1846463 |
aatgatgttatctccctcgtaaccagagat |
1846492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 421
Target Start/End: Complemental strand, 4787773 - 4787667
Alignment:
| Q |
315 |
gtcaatagcttcaagaagggtagg-cccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaacaaatgg |
413 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||| ||||| ||||| |||| | ||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
4787773 |
gtcaatagcttcaagaagggtcggacccatt-taccagtcaaaattagtggagcggtcaatcaagttatctccatcaaaactagagatgggaacaaatgg |
4787675 |
T |
|
| Q |
414 |
aatatcat |
421 |
Q |
| |
|
||| |||| |
|
|
| T |
4787674 |
aatttcat |
4787667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 421
Target Start/End: Original strand, 4297399 - 4297505
Alignment:
| Q |
315 |
gtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaacaaatgga |
414 |
Q |
| |
|
||||||||||||||||||||| || || | |||||||||| ||||| ||||| |||| | ||||||||| | ||||| ||||||||||| ||||||| |
|
|
| T |
4297399 |
gtcaatagcttcaagaagggtgggacccttgtaccagtcaaaattagtggagcggtcaatcaagttatctccgtcaaaactagagatgggaataaatgga |
4297498 |
T |
|
| Q |
415 |
atatcat |
421 |
Q |
| |
|
|| |||| |
|
|
| T |
4297499 |
atttcat |
4297505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 412
Target Start/End: Original strand, 16348983 - 16349161
Alignment:
| Q |
234 |
tccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagg |
333 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| || | | | ||||||||| || |||||||||| || ||||| |||||| ||||||||||||| |
|
|
| T |
16348983 |
tccaattcctccaatcttgtagacaccctgaagtggtaatcggagaggcttgtctgatagcctcttaggctcgttgattcggtcaagagcttcaagaagg |
16349082 |
T |
|
| Q |
334 |
gtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaacaaatg |
412 |
Q |
| |
|
|| || || | |||| ||||| || |||||| ||||||| | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16349083 |
gtgggacccttgtacccatcaagttttgtagagggctcaaccaagttatctccctcaaaaccagagatgggaacaaatg |
16349161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 411
Target Start/End: Complemental strand, 39242601 - 39242536
Alignment:
| Q |
346 |
taccagtcaaggttagtagagcgctcaacgatgttatctcccttaaaaccagagatgggaacaaat |
411 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||| |
|
|
| T |
39242601 |
taccagtcaatattagtagagcgctcaatcaagttatctccgttaaaaccagagatgggaacaaat |
39242536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 7520192 - 7520141
Alignment:
| Q |
208 |
gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacat |
259 |
Q |
| |
|
|||||||||||||| || || |||||||||||||| ||||||||||| |||| |
|
|
| T |
7520192 |
gtctcaacacgtccaactggcacagttccaataccaccaatcttgtaaacat |
7520141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 7529729 - 7529678
Alignment:
| Q |
208 |
gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacat |
259 |
Q |
| |
|
|||||||||||||| || || |||||||||||||| ||||||||||| |||| |
|
|
| T |
7529729 |
gtctcaacacgtccgactggcacagttccaataccaccaatcttgtaaacat |
7529678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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