View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4682-Insertion-5 (Length: 422)
Name: NF4682-Insertion-5
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682-Insertion-5 |
 | |
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| [»] chr3 (2 HSPs) |
| |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Original strand, 29594583 - 29594998
Alignment:
| Q |
7 |
attaacattaatataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaattttatcaaaggattggttttgcat |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29594583 |
attaacgttaatataccaccagtttgatcttgaacaccttgtaagattttttataagctttttcaatcacactaattttatcaaaggattggttttgcat |
29594682 |
T |
|
| Q |
107 |
tacacaaatttaagagagcatatcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctcatta |
206 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
29594683 |
tacacaaatttaagagagcagatattgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctaatta |
29594782 |
T |
|
| Q |
207 |
aagaggtttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29594783 |
aagaggtttgggaaaaatacattcatctcccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacctcccctattatt |
29594882 |
T |
|
| Q |
307 |
tgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgctgatgtgaatttaacttctctgcaatcaac |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
29594883 |
tgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgttgatgtgaatttaacttctctgcaattaac |
29594982 |
T |
|
| Q |
407 |
accaaataatttcctt |
422 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
29594983 |
accaaagaatttcctt |
29594998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 11353611 - 11353724
Alignment:
| Q |
216 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgt |
315 |
Q |
| |
|
||||||||||| |||| || |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||| ||| | |
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|
| T |
11353611 |
gggaaaaatacgttcacctcccttaaggtctcgttaaatgacacagacaccccctctattttcttatttaacaatgacctcccctactgtttaacacctt |
11353710 |
T |
|
| Q |
316 |
ttaacttccgtcaa |
329 |
Q |
| |
|
|||||||||||||| |
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|
| T |
11353711 |
ttaacttccgtcaa |
11353724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Original strand, 52077476 - 52077891
Alignment:
| Q |
7 |
attaacattaatataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaattttatcaaaggattggttttgcat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
52077476 |
attaacattaatataccaccagtttgatcttgaacaccttgtaagatttttcataagctttttcaatcacactaattttatcaaatgactggttttgcat |
52077575 |
T |
|
| Q |
107 |
tacacaaatttaagagagcatatcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctcatta |
206 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
52077576 |
tacacaaatttaagagagcagatattgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctaatta |
52077675 |
T |
|
| Q |
207 |
aagaggtttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
52077676 |
aagaggtttgggaaaaatacattcatctcccttgaggtctctttaaaagacacagacaccccctctattttcttatttaacattgacctcccctattatt |
52077775 |
T |
|
| Q |
307 |
tgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgctgatgtgaatttaacttctctgcaatcaac |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
52077776 |
tgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgttgatgtgaatttaacttctctgcaataaac |
52077875 |
T |
|
| Q |
407 |
accaaataatttcctt |
422 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
52077876 |
accaaagaatttcctt |
52077891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 27 - 422
Target Start/End: Original strand, 52088298 - 52088693
Alignment:
| Q |
27 |
agtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaattttatcaaaggattggttttgcattacacaaatttaagagagca |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |
|
|
| T |
52088298 |
agtttgatcttgaacaccttgtaagatttttcataagctttttcaatcacactaattttatcaaatgactggttttgcattacacaaatttaagagggca |
52088397 |
T |
|
| Q |
127 |
tatcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctcattaaagaggtttgggaaaaatac |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52088398 |
ggtcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctaattaaagaggtttgggaaaaatac |
52088497 |
T |
|
| Q |
227 |
attcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgt |
326 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52088498 |
attcatctcccttgaggtctctttaaacgacacagacaccccctctattttcttatttaacattgacctcccctattatttgacattgtttaacttccgt |
52088597 |
T |
|
| Q |
327 |
caagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgctgatgtgaatttaacttctctgcaatcaacaccaaataatttcctt |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52088598 |
caagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgttgatgtgaatttaacttctctgcaatcaacaccaaagaatttcctt |
52088693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 422
Target Start/End: Complemental strand, 29058795 - 29058378
Alignment:
| Q |
7 |
attaacattaatataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaattttatcaaaggattggttttgcat |
106 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
29058795 |
attaacatcaatataccactagtttgatcttgaacaccttgtaagatttttcataagctttttcaatcacactaattttatcaaaggactggctttgcat |
29058696 |
T |
|
| Q |
107 |
tacacaaatttaagagagcatatcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctcatta |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |
|
|
| T |
29058695 |
tacacaaatttaagagagcagatcttgcaactcagtcttctattttatttacaaggtttcatcatatctgaaaatatttaagcttcccacattctaatta |
29058596 |
T |
|
| Q |
207 |
aagaggtttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatt |
306 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29058595 |
cagaggtttgagaaaaatacattaatctctcttgaggtctctttaaatgacacagacacccccactattttcttatttaacattgacctcccctattatt |
29058496 |
T |
|
| Q |
307 |
tgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaa--gaaaaact-attgttgcctctcgctgatgtgaatttaacttctctgcaatc |
403 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||| |||||||||||||||| ||| |
|
|
| T |
29058495 |
tgacactgtttaacttccgtcaagttatttttatcaaacaaaaaaaaagaaaaaactaattgttgcctctcgttgatgt-aatttaacttctctgcgatc |
29058397 |
T |
|
| Q |
404 |
aacaccaaataatttcctt |
422 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
29058396 |
aacaccaaagaatttcctt |
29058378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 43899059 - 43898996
Alignment:
| Q |
214 |
ttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
277 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
43899059 |
ttgggaaaactatattcatctcccttgaggtctcttgaaatgtaactcacaccccctctatttt |
43898996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 51288680 - 51288555
Alignment:
| Q |
31 |
tgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaattttatcaaaggattggttttgcattacacaaatttaagagagcatatc |
130 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| || ||| |||||||| || | |||||||||||||||| | |
|
|
| T |
51288680 |
tgatctttaacaccttgtaaaatttttcataagctttttcaatcacactaa-tttataaagggactggttttggatcatacaaatttaagagagcggaat |
51288582 |
T |
|
| Q |
131 |
ttgcaactcagtcttctattttattta |
157 |
Q |
| |
|
||| |||||| | |||||||||||||| |
|
|
| T |
51288581 |
ttgaaactcaattttctattttattta |
51288555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 4564336 - 4564436
Alignment:
| Q |
240 |
gaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttattttta |
339 |
Q |
| |
|
||||||||||||||| | ||| ||||||| |||||||| |||| ||||| |||| |||| |||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
4564336 |
gaggtctctttaaataatacaaacaccccttctatttttttatctaacaatgacctcccatattgtttgacatcgtttaacttccgtcaaattattttta |
4564435 |
T |
|
| Q |
340 |
t |
340 |
Q |
| |
|
| |
|
|
| T |
4564436 |
t |
4564436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 344
Target Start/End: Original strand, 4558105 - 4558211
Alignment:
| Q |
239 |
tgaggtctctttaaatgacacagacaccccctcta-ttttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttatttt |
337 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | || |||| |||||||||| |||| |||||| || ||| |||| |||||||| |||| ||||||| |
|
|
| T |
4558105 |
tgaggtctctttaaataacacaaacaccccttttattttttttatttaacaatgacctcccctgttgtttaacatcctttaactttgatcaaattatttt |
4558204 |
T |
|
| Q |
338 |
tatcaaa |
344 |
Q |
| |
|
||||||| |
|
|
| T |
4558205 |
tatcaaa |
4558211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 12142133 - 12142073
Alignment:
| Q |
216 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
277 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
12142133 |
gggaaaaatacactcatctcccttgaggtctctttaaatgacgccgaca-cccctctatttt |
12142073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 44539625 - 44539564
Alignment:
| Q |
216 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
277 |
Q |
| |
|
|||||||||||||||| || || |||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
44539625 |
gggaaaaatacattcacctcccctgagttttctttaaatgacagagacaccccctctatttt |
44539564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 24153192 - 24153249
Alignment:
| Q |
216 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctcta |
273 |
Q |
| |
|
||||||| |||| ||| |||||||||||||| || |||||| |||||||||| ||||| |
|
|
| T |
24153192 |
gggaaaattacactcaccttccttgaggtctattaaaatgagacagacacccactcta |
24153249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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