View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4682-Insertion-6 (Length: 329)

Name: NF4682-Insertion-6
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4682-Insertion-6
NF4682-Insertion-6
[»] chr5 (10 HSPs)
chr5 (8-329)||(39451318-39451639)
chr5 (123-326)||(39455060-39455263)
chr5 (9-326)||(39460566-39460883)
chr5 (39-326)||(39475855-39476142)
chr5 (8-323)||(39457835-39458151)
chr5 (66-327)||(39483633-39483894)
chr5 (7-325)||(39464095-39464413)
chr5 (8-326)||(39486783-39487101)
chr5 (234-326)||(39470296-39470388)
chr5 (7-319)||(39472347-39472659)


Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 39451318 - 39451639
Alignment:
Q  8 catgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451318 catgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgt 39451417  T
Q  108 gaacgagacaacgttgattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaacttgtttccttcaagctcattgcctggttccg 207  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  39451418 gaacgagacaacgttgattcaactcagttgcagcagcagaaagagttagccatcccgactttcgctcacttgtttccttcaagctcattgcctggttccg 39451517  T
Q  208 tcctaagcaaggaatgggaaccgtttttcatgagcttcataaaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451518 tcctaagcaaggaatgggaaccgtttttcatgagcttcatagaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcaca 39451617  T
Q  308 cgcggttcactcctttttcaat 329  Q
    ||||||||||||||||||||||    
T  39451618 cgcggttcactcctttttcaat 39451639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 123 - 326
Target Start/End: Original strand, 39455060 - 39455263
Alignment:
Q  123 gattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaacttgtttccttcaagctcattgcctggttccgtcctaagcaaggaat 222  Q
    |||||||||||||||| ||| ||||| ||||||||||| ||||||||| |||| ||||||||||||| |||||||||  ||||| | |||||||||||||    
T  39455060 gattcaactcagttgctgcagcagaacgagttagccattccgactttcaccaatttgtttccttcaaactcattgccacgttccctgctaagcaaggaat 39455159  T
Q  223 gggaaccgtttttcatgagcttcataaaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctt 322  Q
    || ||||| |||||| |||||    || ||||||||||||||||||||| || |||||||||||||||||||| || ||||| || ||||||||||||||    
T  39455160 ggaaaccggttttcaagagctatgcaagaggcctcaagaatgccgatggaatcatagtaaattcatttgaagatcttgaatctcatgcggttcactcctt 39455259  T
Q  323 tttc 326  Q
    ||||    
T  39455260 tttc 39455263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 39460566 - 39460883
Alignment:
Q  9 atgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgtg 108  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||||| || ||||||||||||||||  ||||||||||| || || || ||||    
T  39460566 atgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttggttcaaatcttcatatccacactcttcgtg 39460665  T
Q  109 aacgagacaacgttgattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaacttgtttccttcaagctcattgcctggttccgt 208  Q
    || |||||||||| ||||||| |||||||||||| ||||  || || ||||| || ||||||||||||| | |||||  |  |||  ||||  ||||| |    
T  39460666 aaagagacaacgtagattcaaatcagttgcagcagcagactgaattggccataccaactttcgccaactcggttcctatatactcgctgcccagttccat 39460765  T
Q  209 cctaagcaaggaatgggaaccgtttttcatgagcttcataaaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacac 308  Q
     |||| ||||||||||||| | ||||| |||| ||        ||||||||||| ||  |||| |||||||||||||||||||||||||||||||| ||     
T  39460766 gctaaacaaggaatgggaatccttttttatgaactatgctggtggcctcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatcccat 39460865  T
Q  309 gcggttcactcctttttc 326  Q
    || ||||| || ||||||    
T  39460866 gcagttcaatcatttttc 39460883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 39 - 326
Target Start/End: Original strand, 39475855 - 39476142
Alignment:
Q  39 cctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgtgaacgagacaacgttgattcaactcagttgc 138  Q
    |||| |||||| |||||||||||||| |||||||||||||||||||||||| |  || | || || |||||||||||||| || ||||| |||||| |||    
T  39475855 cctacgctcgttttcttcacttctggtgttgcttcccttggtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgc 39475954  T
Q  139 agcaacagaaagagttagccatcccgactttcgccaacttgtttccttcaagctcattgcctggttccgtcctaagcaaggaatgggaaccgtttttcat 238  Q
     ||  ||||| ||| |||||||||||| ||||||||||    |||||||||  ||||||||  |||  || |||  ||||||||||||  ||||||||||    
T  39475955 tgctgcagaacgaggtagccatcccgagtttcgccaaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggagtcgtttttcat 39476054  T
Q  239 gagcttcataaaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttc 326  Q
    |||  |   || |||||||||||| |   |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  39476055 gagacttgcaagaggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttc 39476142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 39458151 - 39457835
Alignment:
Q  8 catgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaa-tcttcatattcataccctccg 106  Q
    |||||||||| |||  ||||||||||| || |||| |||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||   |       
T  39458151 catgattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaaatcttcatattcataatatgtt 39458052  T
Q  107 tgaacgagacaacgttgattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaacttgtttccttcaagctcattgcctggttcc 206  Q
    ||||||||||||||||||||| |||||||||| ||| ||||  ||||| |||||||    |||||| ||||   ||||||||| | | |||||  ||||     
T  39458051 tgaacgagacaacgttgattccactcagttgctgcagcagactgagttggccatccgaggtttcgctaactcagttccttcaaacactttgcccagttca 39457952  T
Q  207 gtcctaagcaaggaatgggaaccgtttttcatgagcttcataaaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcac 306  Q
    || ||| |||||||||||||  | || ||||||||||     ||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||      
T  39457951 gtgctacgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcct 39457852  T
Q  307 acgcggttcactccttt 323  Q
    | || ||||||||||||    
T  39457851 atgccgttcactccttt 39457835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 66 - 327
Target Start/End: Original strand, 39483633 - 39483894
Alignment:
Q  66 gttgcttcccttggtttgaatcttcatattcataccctccgtgaacgagacaacgttgattcaactcagttgcagcaacagaaagagttagccatcccga 165  Q
    |||||||||||||||||||||||| || |||| || || ||||||||||||||  | ||||  |||||| ||| |||| ||||||||  |||||||||||    
T  39483633 gttgcttcccttggtttgaatctttatcttcacactcttcgtgaacgagacaatatcgatttgactcagctgctgcaagagaaagaggcagccatcccga 39483732  T
Q  166 ctttcgccaacttgtttccttcaagctcattgcctggttccgtcctaagcaaggaatgggaaccgtttttcatgagcttcataaaaggcctcaagaatgc 265  Q
     ||| ||||||    |||||||||   |||||||| | |  || | || ||| ||| |||| || |||||||||||| |   || |||||||||||| |     
T  39483733 gttttgccaaccccattccttcaaatccattgcctagctttgtgcgaaacaaagaacgggagccatttttcatgagccttgcaagaggcctcaagaaagt 39483832  T
Q  266 cgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttca 327  Q
      ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  39483833 aaatggcattatagtaaattcattttaagagctagaatctcacgcggttcactcttttttca 39483894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 39464413 - 39464095
Alignment:
Q  7 acatgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccg 106  Q
    ||||||||||| ||||||| |||||||| || |||  | | || |||||||||||  | ||||||| |||||||||||||||||||||||| ||  |       
T  39464413 acatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttgaatcttcatattcacactttgtt 39464314  T
Q  107 tgaacgagacaacgttgattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaacttgtttccttcaagctcattgcctggttcc 206  Q
    ||||||||||||||| |||||||||||| || |||||| ||  || ||  || |||||| |||||| ||||   ||||| |||  || |||||  || |     
T  39464313 tgaacgagacaacgtcgattcaactcagctggagcaactgactgaattgtccctcccgagtttcgctaactccgttcctacaaaatcgttgcccagtgca 39464214  T
Q  207 gtcctaagcaaggaatgggaaccgtttttcatgagcttcataaaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcac 306  Q
    ||  || |||||||||  ||  |||||||||||||||    ||||||||||||||| || |||||  ||||||||||||||||||||||||||||||| |    
T  39464213 gtaatacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatccc 39464114  T
Q  307 acgcggttcactccttttt 325  Q
    | || ||||| || |||||    
T  39464113 atgcagttcattcattttt 39464095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 39486783 - 39487101
Alignment:
Q  8 catgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgt 107  Q
    |||||||||||||||||||||||||||  | |||  |||| ||||||||||||| || |||||||  ||||||||||  || ||| |||| || ||   |    
T  39486783 catgattgatattgccaaagaattttccatccctgcgctcatcttcttcacttccggtgttgcttttcttggtttgatgctccatcttcacactctgttt 39486882  T
Q  108 gaacgagacaacgttgattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaacttgtttccttcaagctcattgcctggttccg 207  Q
    |||||||||||| | |||||||||||||||| ||| ||||| ||| |||||||||| | ||| ||||||| | ||||    | ||| |||||  ||| |     
T  39486883 gaacgagacaacatcgattcaactcagttgctgcagcagaacgaggtagccatcccaagttttgccaactcgattccaattaactcgttgcccagtttcc 39486982  T
Q  208 tcctaagcaaggaatgggaaccgtttttcatgagcttcataaaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcaca 307  Q
    | |||  ||||||||  ||| |||||||||||| |||       ||| |||| || ||  ||| ||||||||||||||||||||||||| ||||||||||    
T  39486983 tgctacacaaggaatatgaatcgtttttcatgaactttgccggtggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcaca 39487082  T
Q  308 cgcggttcactcctttttc 326  Q
     || ||||| |||||||||    
T  39487083 tgctgttcaatcctttttc 39487101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 39470388 - 39470296
Alignment:
Q  234 ttcatgagcttcataaaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttc 326  Q
    ||||||||||||   ||||||||||||||||||||||||||||| || |||||||||||||||||||||||  | ||||||||||||||||||    
T  39470388 ttcatgagcttcgccaaaggcctcaagaatgccgatggcattattgtcaattcatttgaagagctagaatcctatgcggttcactcctttttc 39470296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 7 - 319
Target Start/End: Original strand, 39472347 - 39472659
Alignment:
Q  7 acatgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccg 106  Q
    ||||||||||| |||||||||| || || || |||| ||| |||||||||||||| || ||||| | |||||| |||| | ||||| || | || || ||    
T  39472347 acatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattgagttttcatctttacactcttcg 39472446  T
Q  107 tgaacgagacaacgttgattcaactcagttgcagcaacagaaagagttagccatcccgactttcgccaacttgtttccttcaagctcattgcctggttcc 206  Q
    | |||||||||| ||  |||||||| |||||   ||||  |  || || ||  |||||| |||||| |||||| ||||  |||   |||||||  || |     
T  39472447 tcaacgagacaatgtctattcaactaagttgttacaactcactgacttggctgtcccgagtttcgctaacttggttccaacaaaagcattgcccagtgct 39472546  T
Q  207 gtcctaagcaaggaatgggaaccgtttttcatgagcttcataaaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcac 306  Q
    || |||||||| ||||||||  ||||| | ||| |||     |||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |    
T  39472547 gtgctaagcaaagaatgggagtcgtttatgatgggctattggaaaggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatccc 39472646  T
Q  307 acgcggttcactc 319  Q
    |||| ||||||||    
T  39472647 acgcagttcactc 39472659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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