View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682-Insertion-8 (Length: 174)
Name: NF4682-Insertion-8
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 5621583 - 5621417
Alignment:
| Q |
8 |
gtagagagcttcaatgacaatataacgccccaaattcttggtccccttatatttggaagtaatgttctctaaagtttctcttaaagaatccatgttattg |
107 |
Q |
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| T |
5621583 |
gtagagagcttcaatgacaatataacgcctcaaattcttggtcctcttatatatggaagtaatgttctctaaagtttctcttaaagaatccatgttattg |
5621484 |
T |
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| Q |
108 |
tgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccagcggactccct |
174 |
Q |
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| T |
5621483 |
tgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccagtggactccct |
5621417 |
T |
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Target: chr5 (Bit Score: 93; Significance: 1e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 30635227 - 30635391
Alignment:
| Q |
8 |
gtagagagcttcaatgacaatataacgccccaaattcttggtccccttatatttggaagtaatgttctctaaagtttctcttaaagaatccatgttattg |
107 |
Q |
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| T |
30635227 |
gtagagagcttcgacaacaatataacgcctcaaattcttggtgtgcttatacttagaagtaagcttctctaaagtttcttctaaagaatccatgtcattg |
30635326 |
T |
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| Q |
108 |
tgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccagcggactcc |
172 |
Q |
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| T |
30635327 |
tgcttaaaatacacgacagtgcttctagaaagataaaggccattctgtattccccagtggactcc |
30635391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 21424028 - 21424192
Alignment:
| Q |
8 |
gtagagagcttcaatgacaatataacgccccaaattcttggtccccttatatttggaagtaatgttctctaaagtttctcttaaagaatccatgttattg |
107 |
Q |
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|||||||||||| | ||||||||||||| |||||||||||| ||||||||| ||| ||| |||||||| |||||| |||||||||||||| |||| |
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| T |
21424028 |
gtagagagcttcgacaacaatataacgcctcaaattcttggtgtgcttatatttagaactaagcttctctaatgtttcttctaaagaatccatgtcattg |
21424127 |
T |
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| Q |
108 |
tgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccagcggactcc |
172 |
Q |
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||||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21424128 |
tgcttaaaatacacgacagtgcttctagaaagataaaggccattctgtattccccagtggactcc |
21424192 |
T |
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