View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_high_15 (Length: 327)
Name: NF4682_high_15
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 11181227 - 11180910
Alignment:
| Q |
11 |
cataggtagtgtcacgggtttatacatgttcaaaatagacggtagaaaaagtaacactaggagtgacatgcggaacaagaaaactatagagaatttcacc |
110 |
Q |
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| T |
11181227 |
cataggtagtgtcacgggtttatacatgttcaaaatagacagtagaaaaagtaacactaggagtgacatgcggaacaagaaaactatagagaatttcacc |
11181128 |
T |
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| Q |
111 |
tgcggggtttgtttgggacaggacaggtccagggcattcaaacaaaacaatagtaaaaacagaacacaatagtgcatgcagatgcaggtgat-------- |
202 |
Q |
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| T |
11181127 |
tgcggggtttgtttgggacaggacaggtccagggcattcaaacaaagcaatagtaaaaacagaacacaatagtgcatgcagatgcaggtgatagatcacg |
11181028 |
T |
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| Q |
203 |
--------agatacagaaacaccnnnnnnnccgagggtgcctttctagtctatactacaaatagctgttcctttgacaacattgttggaaatcttgtttc |
294 |
Q |
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| T |
11181027 |
caggtgatagatacagaaacaccaaaaaaaccgagggtgcctttctagtctatactacaaatagctgttcctttgacaacattgttggaaatcttgtttc |
11180928 |
T |
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| Q |
295 |
aattccaattttgatttt |
312 |
Q |
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|||||||||||||||||| |
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| T |
11180927 |
aattccaattttgatttt |
11180910 |
T |
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