View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_high_18 (Length: 296)
Name: NF4682_high_18
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 1112590 - 1112335
Alignment:
| Q |
20 |
aaagttgtacctacaagaaacaaatgtgaaaagtttttccaaatctgactataccatacctatctttttccaactttttccattatacttttttacagca |
119 |
Q |
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| T |
1112590 |
aaagttgttcctactagaaacaaatgtgaaaagtttttccaaatctgactataccatacctatctttttccaactttt-ccattatacttttttacagca |
1112492 |
T |
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| Q |
120 |
gcaatcaaaagtttatcctgtaaataagaaaacaagaaaagtgagattcatgactctgtatagataatgatgttattggcaagaaattctctttggttga |
219 |
Q |
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| T |
1112491 |
tcaatcaaaagtttatcctgtaaataagaaaacaagaaaagtgagattcatgactctgtatagataatgatgttattggcaagaaattctctttggttga |
1112392 |
T |
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| Q |
220 |
atagtttcttggtaaacaagtaactttaagaattgaatggtttgttgatccttacct |
276 |
Q |
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| T |
1112391 |
atagtttcttggtaaacaagtaactttaagaattgaatggtttgttgatccttacct |
1112335 |
T |
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