View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4682_high_26 (Length: 225)

Name: NF4682_high_26
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4682_high_26
NF4682_high_26
[»] chr6 (8 HSPs)
chr6 (11-225)||(7047418-7047632)
chr6 (19-159)||(7042080-7042217)
chr6 (37-157)||(9171440-9171560)
chr6 (19-103)||(2926114-2926198)
chr6 (51-156)||(9158869-9158974)
chr6 (89-157)||(7038302-7038370)
chr6 (99-142)||(7013517-7013560)
chr6 (99-142)||(7026453-7026496)
[»] chr5 (1 HSPs)
chr5 (67-141)||(18571720-18571791)
[»] chr3 (3 HSPs)
chr3 (51-157)||(9344486-9344586)
chr3 (99-152)||(9448984-9449037)
chr3 (102-147)||(9687347-9687392)
[»] chr1 (1 HSPs)
chr1 (93-148)||(18991949-18992004)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 7047418 - 7047632
Alignment:
Q  11 cacagaaaagtgggtggaagaatcgagttttgccacgcgtgttttggctaactcttatcaaccaagggcgaagcagggtttgttgttcttgttgttgctg 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7047418 cacagaaaagtgggtggaaaaatcgagttttgccacgcgtgttttggctaactcttatcaaccaagggcgaagtagggtttgttgttcttgttgttgctg 7047517  T
Q  111 tggtggtttgatgaggaagatattttgtttggagaggtgacagaatggagggtttttgtcgttttgctcagagatgaatggtaatttgaagaatgggaac 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7047518 tggtggtttgatgaggaagatattttgtttggagaggtgacagaatggagggtttttgtcgttttgctcagagatgaatggtaatttgaagactgggaac 7047617  T
Q  211 ttgtagggtaaaatg 225  Q
    |||||||||||||||    
T  7047618 ttgtagggtaaaatg 7047632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 7042080 - 7042217
Alignment:
Q  19 agtgggtggaagaatcgagttttgccacgcgtgttttggctaactcttatcaaccaagggcgaagcagggtttgttgttcttgttgttgctgtggtggtt 118  Q
    ||||||||||| ||| | |||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||||   ||||||||| ||||||||||    
T  7042080 agtgggtggaataattgggtttggccacgcgtgttttggcaaactcttatcaaccaagggcgaagtagagtttgttg---ttgttgttgttgtggtggtt 7042176  T
Q  119 tgatgaggaagatattttgtttggagaggtgacagaatgga 159  Q
    |||||||||||| ||| ||||||||||||| || |||||||    
T  7042177 tgatgaggaagaaattatgtttggagaggtaaccgaatgga 7042217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 9171440 - 9171560
Alignment:
Q  37 gttttgccacgcgtgttttggctaactcttatcaaccaagggcgaagcagggtttgttgttcttgttgttgctgtggtggtttgatgaggaagatatttt 136  Q
    |||| |||| |||||||||||| ||||| || |||||| |||||||| |||  ||||| |||||||||||| |||||||||| ||||||| ||| |||||    
T  9171440 gtttggccatgcgtgttttggccaactcctaccaaccacgggcgaagtaggcgttgttcttcttgttgttgttgtggtggttggatgaggtagagatttt 9171539  T
Q  137 gtttggagaggtgacagaatg 157  Q
    |||||| ||||| ||||||||    
T  9171540 gtttggtgaggtaacagaatg 9171560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 2926198 - 2926114
Alignment:
Q  19 agtgggtggaagaatcgagttttgccacgcgtgttttggctaactcttatcaaccaagggcgaagcagggtttgttgttcttgtt 103  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||  ||| |||||||||| || |||||    
T  2926198 agtgggtggaagaattgagtttggccacgcgtattttggctaactcttatcaaccaagggaaaagtagggtttgttcttgttgtt 2926114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 9158974 - 9158869
Alignment:
Q  51 gttttggctaactcttatcaaccaagggcgaagcagggtttgttgttcttgttgttgctgtggtggtttgatgaggaagatattttgtttggagaggtga 150  Q
    |||||||| ||||| || |||||| |||||||| |||  ||||| |||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||| |    
T  9158974 gttttggccaactcctaccaaccacgggcgaagtaggcgttgttcttcttgttgttgttgtggtggttggatgaggtagagattttgtttggtgaggtaa 9158875  T
Q  151 cagaat 156  Q
    ||||||    
T  9158874 cagaat 9158869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 7038302 - 7038370
Alignment:
Q  89 tttgttgttcttgttgttgctgtggtggtttgatgaggaagatattttgtttggagaggtgacagaatg 157  Q
    ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| | ||||||||    
T  7038302 tttgttgttcttgttgttgttgtggcggtttgatgaggaagagattttgtttggagagttaacagaatg 7038370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 7013517 - 7013560
Alignment:
Q  99 ttgttgttgctgtggtggtttgatgaggaagatattttgtttgg 142  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  7013517 ttgttcttgctgtggtggtttgatgaggaagatattttgtttgg 7013560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 7026453 - 7026496
Alignment:
Q  99 ttgttgttgctgtggtggtttgatgaggaagatattttgtttgg 142  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  7026453 ttgttcttgttgtggtggtttgatgaggaagatattttgtttgg 7026496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 18571720 - 18571791
Alignment:
Q  67 atcaaccaagggcgaagcagggtttgttgttcttgttgttgctgtggtggtttgatgaggaagatattttgtttg 141  Q
    |||||||||||||| || ||||||||||||| ||||||| ||   |||||||||||||||||||  |||||||||    
T  18571720 atcaaccaagggcggagtagggtttgttgttgttgttgtagc---ggtggtttgatgaggaagaagttttgtttg 18571791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 9344486 - 9344586
Alignment:
Q  51 gttttggctaactcttatcaaccaagggcgaagcagggtttgttgttcttgttgttgctgtggtggtttgatgaggaagatattttgtttggagaggtga 150  Q
    ||||||| ||| |||||||||||||||||   | |||||   |||||||||||||||||||  ||||||||||||||||||| | | |||| |||||| |    
T  9344486 gttttggataattcttatcaaccaagggc---gtagggt---ttgttcttgttgttgctgttttggtttgatgaggaagataatgtttttgaagaggtaa 9344579  T
Q  151 cagaatg 157  Q
    || ||||    
T  9344580 caaaatg 9344586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 9448984 - 9449037
Alignment:
Q  99 ttgttgttgctgtggtggtttgatgaggaagatattttgtttggagaggtgaca 152  Q
    ||||||||| |||  ||||||||||||||||||||| | ||| |||||||||||    
T  9448984 ttgttgttgttgttttggtttgatgaggaagatattgttttttgagaggtgaca 9449037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 9687347 - 9687392
Alignment:
Q  102 ttgttgctgtggtggtttgatgaggaagatattttgtttggagagg 147  Q
    |||||| | ||||||||||||||| || ||||||||||||||||||    
T  9687347 ttgttggtttggtggtttgatgagaaaaatattttgtttggagagg 9687392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 18991949 - 18992004
Alignment:
Q  93 ttgttcttgttgttgctgtggtggtttgatgaggaagatattttgtttggagaggt 148  Q
    ||||| ||||| ||| || |||||||||||||||||||| || |||||||||||||    
T  18991949 ttgttgttgttcttgttgaggtggtttgatgaggaagatgttgtgtttggagaggt 18992004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University