View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_high_29 (Length: 209)
Name: NF4682_high_29
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 39451323 - 39451140
Alignment:
| Q |
17 |
atcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39451323 |
atcatggtggtgcagaacatgtcaacaacgatggtggcgaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtt |
39451224 |
T |
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| Q |
117 |
tctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39451223 |
tctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatgt |
39451140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 39475829 - 39475646
Alignment:
| Q |
17 |
atcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtt |
116 |
Q |
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||||||||||||||||||||||||||||||| || ||| ||| ||||| || |||| ||| |||||||||||| || || |||||||| || ||||||| |
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| T |
39475829 |
atcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtt |
39475730 |
T |
|
| Q |
117 |
tctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatgt |
200 |
Q |
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||||||||||||||||||| | |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39475729 |
tctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaaggttgatgatgt |
39475646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 39486788 - 39486608
Alignment:
| Q |
17 |
atcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattt---tctcctcctccagtagtgaggttagaaacggcttgtttgacatttg |
113 |
Q |
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||||||||||||||||||||||||||||||| || ||||||| |||| | | |||| ||| |||||||||||| || || ||||||||||| |||| |
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| T |
39486788 |
atcatggtggtgcagaacatgtcaacaacgaaggcggcaaggtgtccaggtggttgtccttctctagtagtgaggttggatacagcttgtttgacgtttg |
39486689 |
T |
|
| Q |
114 |
gtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatga |
197 |
Q |
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||||||||||||| |||||||| |||| | |||| ||| | ||||||||| ||||||||| ||||||||||||||||| |
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| T |
39486688 |
gtttctgagcttcaaggagagcgttcatg---acaaaacgtggttcggtgtttgggggaagagaacattctggaaggttgatga |
39486608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 39454899 - 39454780
Alignment:
| Q |
77 |
ccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagag |
176 |
Q |
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|||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| |||| | |||||| | || ||||||| |||||||| ||||||| |
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| T |
39454899 |
ccagtaatgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatgga---ggaaactggattagtgtttgggggaagag |
39454803 |
T |
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| Q |
177 |
aaacttctggaaggttgatgatg |
199 |
Q |
| |
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| T |
39454802 |
agcattctggaaggttgatgatg |
39454780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 39472353 - 39472176
Alignment:
| Q |
17 |
atcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtt |
116 |
Q |
| |
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|||||| | |||||||||||||||||||| | | ||||||||||||||||||| || ||| |||||||||| || |||||||||| ||||||| |
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| T |
39472353 |
atcatgtttgtgcagaacatgtcaacaacaaaagcggcaaggactccattttctgatctg---gtaatgaggttagatactacttgtttgacgtttggtt |
39472257 |
T |
|
| Q |
117 |
tctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatgt |
200 |
Q |
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|||||||||||||||| |||| ||| || | |||| ||| |||||||| | ||||||| |||||||||||||||||||| |
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| T |
39472256 |
tctgagcttcgaggagcgcagtcat---agagggaccttgatctgtgtttggggcaagagaacattctggaaggttgatgatgt |
39472176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 39483580 - 39483462
Alignment:
| Q |
17 |
atcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || ||| ||||| || |||| ||| |||||||||||| || || |||||| | | ||||||| |
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| T |
39483580 |
atcatggtggtgcagaacatgtcaacaacgaaggcggagaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgtattatgtttggtt |
39483481 |
T |
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| Q |
117 |
tctgagcttcgaggagagc |
135 |
Q |
| |
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|||||||||| |||||||| |
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| T |
39483480 |
tctgagcttcaaggagagc |
39483462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 39458146 - 39458259
Alignment:
| Q |
17 |
atcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| || | || ||||||||||||||| | || |||||||||| || ||||||| |||||| ||||||| |
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| T |
39458146 |
atcatggtggtgcagaacatgtcaacaatgaatgcagctaggactccattttctggtgctt---tagtgaggttggagacggcttttttgacgtttggtt |
39458242 |
T |
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| Q |
117 |
tctgagcttcgaggaga |
133 |
Q |
| |
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||||||||| ||||||| |
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| T |
39458243 |
tctgagctttgaggaga |
39458259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 39464451 - 39464560
Alignment:
| Q |
85 |
gaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttct |
184 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||| || |||||||| ||| |||| ||||||||| | | || | ||||||||||||||| |
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| T |
39464451 |
gaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcat---agcggaacctggatcagaggtttggggaagagaaacttct |
39464547 |
T |
|
| Q |
185 |
ggaaggttgatga |
197 |
Q |
| |
|
||||||||||||| |
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| T |
39464548 |
ggaaggttgatga |
39464560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 39460508 - 39460456
Alignment:
| Q |
79 |
agtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgagga |
131 |
Q |
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||||||||| ||||| |||||||||||||| |||| ||||||||||||||||| |
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| T |
39460508 |
agtagtgagattagatacggcttgtttgacgtttgatttctgagcttcgagga |
39460456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 39460428 - 39460389
Alignment:
| Q |
162 |
tgtttggaggaagagaaacttctggaaggttgatgatgtc |
201 |
Q |
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| T |
39460428 |
tgtttgggggaagagaaacttctggaaggttgatgatgtc |
39460389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 39470664 - 39470724
Alignment:
| Q |
75 |
ctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagc |
135 |
Q |
| |
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|||||||||||||||| || | ||||||||||| |||| ||| ||||||||||||||||| |
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| T |
39470664 |
ctccagtagtgaggttggagatagcttgtttgacgtttgctttatgagcttcgaggagagc |
39470724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 43312386 - 43312416
Alignment:
| Q |
17 |
atcatggtggtgcagaacatgtcaacaacga |
47 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
43312386 |
atcatggtggtgcagaacatgtcaacaacga |
43312416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 39464407 - 39464443
Alignment:
| Q |
17 |
atcatggtggtgcagaacatgtcaacaacgatggtgg |
53 |
Q |
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|||||| |||||||||||||||||||||||| ||||| |
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| T |
39464407 |
atcatgttggtgcagaacatgtcaacaacgaaggtgg |
39464443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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