View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4682_high_6 (Length: 471)

Name: NF4682_high_6
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4682_high_6
NF4682_high_6
[»] chr2 (6 HSPs)
chr2 (34-399)||(36338650-36339032)
chr2 (203-318)||(27648486-27648601)
chr2 (400-460)||(36339130-36339187)
chr2 (317-357)||(44686164-44686204)
chr2 (360-394)||(27648394-27648428)
chr2 (360-394)||(44686218-44686252)
[»] chr6 (2 HSPs)
chr6 (203-345)||(353107-353256)
chr6 (211-299)||(14351387-14351473)
[»] chr3 (3 HSPs)
chr3 (203-351)||(53837413-53837568)
chr3 (203-320)||(53833815-53833932)
chr3 (360-395)||(24734349-24734384)
[»] chr1 (1 HSPs)
chr1 (203-320)||(47833942-47834059)
[»] chr5 (4 HSPs)
chr5 (188-321)||(33827629-33827762)
chr5 (203-268)||(23755639-23755704)
chr5 (203-268)||(23821095-23821160)
chr5 (203-268)||(23687654-23687719)
[»] chr4 (1 HSPs)
chr4 (266-321)||(54572992-54573047)
[»] chr7 (3 HSPs)
chr7 (360-395)||(4648283-4648318)
chr7 (186-280)||(17001734-17001826)
chr7 (363-395)||(38787113-38787145)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 34 - 399
Target Start/End: Original strand, 36338650 - 36339032
Alignment:
Q  34 aaaaaagggggtcacaaattgggtgaacagagaaggatcaaaaagagcaaccacttgaagtagaatataagtctttcgcaactgaaaataatgcatgttc 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36338650 aaaaaagggggtcacaaattgggtgaacagagaaggatcaaaaagagcaaccacttgaagtagaatataagtctttcgcaactgaaaataatgcatgttc 36338749  T
Q  134 actagaatcaatcttgataagaactgaattcaacgagattcctcaaggaataaattgttggaaaaatacgacatagaattattataaggtaataaacaac 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |    
T  36338750 actagaatcaatcttgataagaactgaattcaacgagattcctcaagaaataaattgttggaaaaataccacatagaattattataaggtaatagacagc 36338849  T
Q  234 aagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac------cgggct 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||      | || |    
T  36338850 aagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcgaatattgactgaggcgtgcacgaagcactggtt 36338949  T
Q  328 taagagtatttcgccacctcggataggttac----tg-------tctcatagctagtactctccaggatacaacagtcagttc 399  Q
    |||||||||||||||| |||| |||||||||    ||       |||| | ||||||||||||||||||||||||||||||||    
T  36338950 taagagtatttcgccatctcgaataggttacccgatgcagtagatctcgtggctagtactctccaggatacaacagtcagttc 36339032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 27648601 - 27648486
Alignment:
Q  203 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 302  Q
    |||||| |||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| |     
T  27648601 gacatataattattataaggtaataagtaacaagaaatattagcatcaaattaatagagctctaaatataatagaatagagaacaagtaaacttatcgat 27648502  T
Q  303 tattgattgaggcgtg 318  Q
    ||||||||||||||||    
T  27648501 tattgattgaggcgtg 27648486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 36339130 - 36339187
Alignment:
Q  400 aagaagagatgaaagcatctaacaagtttgttctctctcaatgtaacttacgtatccctat 460  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  36339130 aagaagagatgaaagcatctaacaa---tgttctctctcaatgtaacttacgtatccctat 36339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 44686164 - 44686204
Alignment:
Q  317 tgcaccgggcttaagagtatttcgccacctcggataggtta 357  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  44686164 tgcactgggcttaagagtatttcgccacctcggataagtta 44686204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 394
Target Start/End: Complemental strand, 27648428 - 27648394
Alignment:
Q  360 gtctcatagctagtactctccaggatacaacagtc 394  Q
    |||||||||||| ||||||||||||||||||||||    
T  27648428 gtctcatagctaatactctccaggatacaacagtc 27648394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 394
Target Start/End: Original strand, 44686218 - 44686252
Alignment:
Q  360 gtctcatagctagtactctccaggatacaacagtc 394  Q
    |||||||||||| ||||||||||||||||||||||    
T  44686218 gtctcatagctaatactctccaggatacaacagtc 44686252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 203 - 345
Target Start/End: Complemental strand, 353256 - 353107
Alignment:
Q  203 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 302  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||| |     
T  353256 gacatagaattattataaggtaataaacaacaagaaatattagcatcaaattaatagaattctaaatacaatagaatagagaataagtaaactcatcgat 353157  T
Q  303 tattgattgaggcgt-------gcaccgggcttaagagtatttcgccacc 345  Q
    |||||| ||||||||       |||| |||||||||||||||||||||||    
T  353156 tattgactgaggcgtgcacgaagcactgggcttaagagtatttcgccacc 353107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 14351473 - 14351387
Alignment:
Q  211 attattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatc 299  Q
    |||||||||| ||||| ||||||||||| |||||| ||| | |||||| || ||||||| ||||||| |||||||||  ||||||||||    
T  14351473 attattataaagtaattaacaacaagaa-tattagtatc-atttaatacaaatctaaatgcaatagagtagagaataaataaacttatc 14351387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 203 - 351
Target Start/End: Original strand, 53837413 - 53837568
Alignment:
Q  203 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 302  Q
    |||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||| |     
T  53837413 gacataaaattattataaggtaataagcaataagaaatattagcatcaaattaatagaactctaaacataatagaatagagaacaagtaaacttatcgat 53837512  T
Q  303 tattgattgaggcgtgc-------accgggcttaagagtatttcgccacctcggat 351  Q
    |||||| ||||||||||       |  |||||||||||||||||||||||||||||    
T  53837513 tattgactgaggcgtgcatgaagtattgggcttaagagtatttcgccacctcggat 53837568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 203 - 320
Target Start/End: Original strand, 53833815 - 53833932
Alignment:
Q  203 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 302  Q
    |||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||| |||| ||||||||| |  |||||||||| |     
T  53833815 gacatagaattattataaggtaataagcaataagaaatattaacatcaaattaatagaactctaaatataatataatagagaacaactaaacttatcgat 53833914  T
Q  303 tattgattgaggcgtgca 320  Q
    ||||| ||||||||||||    
T  53833915 tattggttgaggcgtgca 53833932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 24734349 - 24734384
Alignment:
Q  360 gtctcatagctagtactctccaggatacaacagtca 395  Q
    |||||||||||| |||||||||||||||||||||||    
T  24734349 gtctcatagctaatactctccaggatacaacagtca 24734384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 203 - 320
Target Start/End: Complemental strand, 47834059 - 47833942
Alignment:
Q  203 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 302  Q
    ||||||||||||||||||||||||||  ||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| |     
T  47834059 gacatagaattattataaggtaataagtaacgagaaatattagcatcaaattaatagatctctaaatataatagaatagagaacaagtaaacttatcgat 47833960  T
Q  303 tattgattgaggcgtgca 320  Q
    |||||| |||||| ||||    
T  47833959 tattgactgaggcatgca 47833942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 321
Target Start/End: Complemental strand, 33827762 - 33827629
Alignment:
Q  188 ttgttggaaaaatacgacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaata 287  Q
    |||| ||||||||  |||| |||| ||||||||||||||||  || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |    
T  33827762 ttgtaggaaaaattagacagagaaatattataaggtaataagtaataagaaatattagcatcaaattaatagaactctaaatataatagaatagagaaca 33827663  T
Q  288 tgtaaacttatcaaatattgattgaggcgtgcac 321  Q
     ||||| |||||    ||||| ||||||||||||    
T  33827662 agtaaatttatcggtcattgactgaggcgtgcac 33827629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 23755639 - 23755704
Alignment:
Q  203 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaa 268  Q
    ||||||||||||||| || || |||||||||||||||||| || |||||||||||| |||||||||    
T  23755639 gacatagaattattaaaaagtgataaacaacaagaattatcagtatcaaattaatacaactctaaa 23755704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 23821095 - 23821160
Alignment:
Q  203 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaa 268  Q
    ||||||||||||||| || || |||||||||||||||||| || |||||||||||| |||||||||    
T  23821095 gacatagaattattaaaaagtgataaacaacaagaattatcagtatcaaattaatacaactctaaa 23821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 23687654 - 23687719
Alignment:
Q  203 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaa 268  Q
    ||||||||||||||| || || |||||||| ||||| ||| || |||||||||||| |||||||||    
T  23687654 gacatagaattattacaaagtgataaacaataagaaatatcagtatcaaattaatacaactctaaa 23687719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 54573047 - 54572992
Alignment:
Q  266 aaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac 321  Q
    |||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  54573047 aaatacaatagaatagagaataagtaaacttatcgattattgactgaggcgtgcac 54572992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 4648283 - 4648318
Alignment:
Q  360 gtctcatagctagtactctccaggatacaacagtca 395  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4648283 gtctcatagctagtactcttcaggatacaacagtca 4648318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 17001734 - 17001826
Alignment:
Q  186 aattgttggaaaaatacgacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaata 280  Q
    |||||||| ||||||  ||||||  |||||||| | ||||||||||||||||| ||| |  |||||||||||| || |||||||| |||| ||||    
T  17001734 aattgttgaaaaaattagacata--attattatgaagtaataaacaacaagaaatatcattatcaaattaatacaaatctaaataaaataaaata 17001826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 38787145 - 38787113
Alignment:
Q  363 tcatagctagtactctccaggatacaacagtca 395  Q
    |||||| ||||||||||||||||||||||||||    
T  38787145 tcatagttagtactctccaggatacaacagtca 38787113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University