View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_high_9 (Length: 435)
Name: NF4682_high_9
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 35159454 - 35159663
Alignment:
| Q |
19 |
actgtgatggttatctcatcaatggaaaaatgaaaactactactctctttgtgtgtgaatgatgtacataggcttgaatatgaccgtaggagtattatca |
118 |
Q |
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| T |
35159454 |
actgtgatggttatctcatcaatggaaaaatgaaaattactactctctttgtgtgtgaatgatgtacataggcttgaatatgaccgtaggagtattatca |
35159553 |
T |
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| Q |
119 |
agttgagaaaaactcgaagcatgtactacatcccaaaacaatatatgttactgtgatggtttattgagtttgatggttgatgcatttgagacatggtttc |
218 |
Q |
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| T |
35159554 |
agttgagaaaaactcgaagcatgtactacatcccaaaacaatatatgttattttgatggtttattgagtttgatggttgatgcatttgagacatggtttc |
35159653 |
T |
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| Q |
219 |
tcaggtgctt |
228 |
Q |
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| T |
35159654 |
tcacgtgctt |
35159663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 302 - 425
Target Start/End: Original strand, 35159737 - 35159863
Alignment:
| Q |
302 |
ttacttatgcaatcaatatcaaattcagcggtagtggtttatgagaagaacca---ccaccaaatctcatatcaactttgtccggtggtggtgatgtgtc |
398 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35159737 |
ttacttatgcaatcaatatcaaattcagcggcagtggtttatcagaagaaccaccaccaccaaatctcatatcaactttgtcccgtggtggtgatgtgtc |
35159836 |
T |
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| Q |
399 |
ttatgacggaacatgtgacaacctatg |
425 |
Q |
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| T |
35159837 |
ttatggcggaacatgtgacaatctatg |
35159863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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