View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_low_1 (Length: 1273)
Name: NF4682_low_1
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 11 - 678
Target Start/End: Complemental strand, 5639137 - 5638469
Alignment:
| Q |
11 |
catcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639137 |
catcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaa |
5639038 |
T |
|
| Q |
111 |
aaaatgaaagaagttccgtgaaaaacactccctctgaactcaaatttaagtaaaattaactaaatacgtactaagtaagaatattagttaagcttgctta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
5639037 |
aaaatgaaagaagttccgtgaaaaacactccctccgaactcaaatttaagtaaaattaactaaatacgtactaattaagaatattagttaaccttgctta |
5638938 |
T |
|
| Q |
211 |
tttttcttggtgcaataagaaaattgcattctccgaactatcattctc-tcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638937 |
tttttcttggtgcaataagaaaattgcattctccgaactatcattctcttcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtg |
5638838 |
T |
|
| Q |
310 |
tttaacactaattgaaatataacagtaatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactannnnnnnnacttaaatt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
5638837 |
tttaacactaattgaaatataacagtaatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactattttttttacttaaatt |
5638738 |
T |
|
| Q |
410 |
tgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagta |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638737 |
tgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagta |
5638638 |
T |
|
| Q |
510 |
tcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttata |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638637 |
tcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttata |
5638538 |
T |
|
| Q |
610 |
agatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtacaatttaaaatttattt |
678 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638537 |
agatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtacaatttaaaatttattt |
5638469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 733 - 1273
Target Start/End: Complemental strand, 5622206 - 5621666
Alignment:
| Q |
733 |
acatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatttt |
832 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5622206 |
acatactggaactccatagtgttcagtgagacctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacaatatttt |
5622107 |
T |
|
| Q |
833 |
tccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaaaaatgtcgaggaaacaattgtcaatagttactgatcaagcaatttta |
932 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5622106 |
tccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaaaaatgtcgaggaaacaattgtcaatagttactgatcaagcaatttta |
5622007 |
T |
|
| Q |
933 |
gtttgcatgcagcaggtaaggcatattatgagcataatagatgtcgttagtatgacaactacagaaaaaataactattacaacttaatggttgagaaaac |
1032 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5622006 |
gtttgcatgcagcaggtaaggcatattatgagcataatagatgttgttagtatgacaactacagaaaaaataactattacaacttaatggttgagaaaac |
5621907 |
T |
|
| Q |
1033 |
cagggcaagtagcagattagtaatacttttttaaggaacaacatcgcaatagacaccaatataacagcaacaccaacagactcaaagtgtttactacaat |
1132 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5621906 |
cagggcaagtagcagattagcaatactcttttaaggaacaacatcgcaatagacaccaatataacagcaacgccaacagactcaaagtgtttactacaat |
5621807 |
T |
|
| Q |
1133 |
ccttcataaatacatattcaaatttcattttctaattactgtaatatctctgcagaaatagtagttcatatagtacaatttaccgataccacaagttgca |
1232 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621806 |
ccttcataaatacatattcaaatttcatttgctaattactgtaatatctcagcagaaatagtagttcatatagtacaatttaccgataccacaagttgca |
5621707 |
T |
|
| Q |
1233 |
agaagcaagcaattggtatagctctttgattttaaacctaa |
1273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
5621706 |
agaagcaagcaattggtatagctctttgattttatacctaa |
5621666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 22965327 - 22965261
Alignment:
| Q |
31 |
gttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaagg |
97 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
22965327 |
gttatgcacatcacttaatcatgcaaattttatagttcggacctgcaaattcaggtattaatgaagg |
22965261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 699 - 740
Target Start/End: Complemental strand, 5638448 - 5638407
Alignment:
| Q |
699 |
tatacacacccacgcccaaatagaactttttagtacatactg |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
5638448 |
tatacacacccacgcccaaatagaacttttcagtacatactg |
5638407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 731 - 885
Target Start/End: Original strand, 30634587 - 30634741
Alignment:
| Q |
731 |
gtacatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatt |
830 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30634587 |
gtacatactggaactccgtagtgttcagtgagacctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaccgatatt |
30634686 |
T |
|
| Q |
831 |
tttccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaa |
885 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
30634687 |
tttccttcaatttaatgatatcatctaagggtgctatttgaccagaattctgaaa |
30634741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 470 - 643
Target Start/End: Original strand, 30634326 - 30634501
Alignment:
| Q |
470 |
tttcagtatacatggaaatccaagaaggtt-atgaa-cagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaat |
567 |
Q |
| |
|
|||||||| || |||||||| ||| |||| ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
30634326 |
tttcagtacacttggaaatctaagttggtttatgaatcagtattacaaatgacactaccatacctggtgatctataactcttgcacttccggtgcagaat |
30634425 |
T |
|
| Q |
568 |
cctccttctgtggccagtgcatgtcccatagcagcagttataagatctaacttatcaacctgcagcacacaaccac |
643 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
30634426 |
cctccttctgtggccaatgcatgtcccatagcagcagttataagatctaacttctcaacctgcagcacacgaccac |
30634501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 731 - 885
Target Start/End: Original strand, 21423373 - 21423527
Alignment:
| Q |
731 |
gtacatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatt |
830 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
21423373 |
gtacatactggaactccatagtgttcagtgagacctcttccagaacttccaagcacgccaaatgagttgctctcatccagtaaaatacgaaaccgatatt |
21423472 |
T |
|
| Q |
831 |
tttccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaa |
885 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
21423473 |
tttccttcaatttaatgatatcatctaagggtgctatttgaccagaattctgaaa |
21423527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 516 - 637
Target Start/End: Original strand, 21423160 - 21423281
Alignment:
| Q |
516 |
atgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttataagatct |
615 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
21423160 |
atgacactaccatacctggtgatctataactcttgcacttccggtgcagaatcctccttctgtggccaatgcatgtcccatagcagcagttataagatct |
21423259 |
T |
|
| Q |
616 |
aacttatcaacctgcagcacac |
637 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
21423260 |
aacttctcaacctgcagcacac |
21423281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 38954590 - 38954654
Alignment:
| Q |
31 |
gttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaa |
95 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38954590 |
gttatgcacatcgcttaatcatgcaaattttatagtttggacctgcaaattcaggtattaatgaa |
38954654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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