View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_low_12 (Length: 388)
Name: NF4682_low_12
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 3568371 - 3568730
Alignment:
| Q |
17 |
acttcctcgtcctgatatccatgttttggagttggccactgatgttgagcaagatgacatgcaagttcttcaaatggagcaaacgcagccagaaaacacg |
116 |
Q |
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| T |
3568371 |
acttcctcgtcctgatatccatgttttggagttggccactgatgttgagcaagatgacatgcaagttcttcaaatggagcaaacgcagccagaaaacacg |
3568470 |
T |
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| Q |
117 |
aacttgcatgttcctttttcggttgcagctgcgtcggtttcaagttttgtagagcacgttgaagtgcatgatgatttggcttctactgatttggtttctg |
216 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568471 |
aactcgcatgttcctttttcggttgcagctgcgtccgtttcaagttttgtagagcacgttgaagtgcatgatgatttggcttctactgatttggtttctg |
3568570 |
T |
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| Q |
217 |
ctagagagcaatctcctttgctggtccaacatttctcccaagaggaagtgtgcatagaccacacgattgaaggaatacgcccttctggctcctcacccac |
316 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3568571 |
ctagagaggaatctcctttgctggtccaacatttctcccaagaggaagtgtgcatagaccacatgattgaaggaatacgcccttctggctcctcacccac |
3568670 |
T |
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| Q |
317 |
attggcgcatcagcagaatgatcttgctaactcggccaacatagcacatttagatgatga |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
3568671 |
attggcgcatcagcagaatgatcttgctaactcggccaacatagcacatttggattatga |
3568730 |
T |
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