View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_low_13 (Length: 372)
Name: NF4682_low_13
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 171 - 357
Target Start/End: Original strand, 46479554 - 46479754
Alignment:
| Q |
171 |
aatggagtatttcatttcttgagatcgggataataaattga---------------atattaatatgacagattctccatttttaaatgaaagttggttt |
255 |
Q |
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| T |
46479554 |
aatggagtatttcatttcttgagatcgggataataaattgaccaataaaaaaaagaatattaatatgacagattctccatttttaaatgaaagttggttt |
46479653 |
T |
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| Q |
256 |
accctcccatcaacaatgatttctacaccaccactcacatgagactcgagattataatatgaattaagagtaattataataaggatagtcttaacttgtg |
355 |
Q |
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| T |
46479654 |
acc-tcccatcaacaatgatttctacaccaccactcacatgagactcgagattatagtatgaattaagagtaattataacaaggatagtgttaacttgtg |
46479752 |
T |
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| Q |
356 |
tc |
357 |
Q |
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|| |
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| T |
46479753 |
tc |
46479754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 46479420 - 46479493
Alignment:
| Q |
37 |
atctctttaatgaagaggaccattaattaattgttataaaatccctagtactttactttagtaacatcgtggtc |
110 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
46479420 |
atctctttaacgaagaggaccattaattaattgttataaaatccatagtactttactttagcaacatcgtggtc |
46479493 |
T |
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