View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_low_19 (Length: 267)
Name: NF4682_low_19
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 29594588 - 29594462
Alignment:
| Q |
18 |
gttaatatctttgttattttagttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgcc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29594588 |
gttaatatctttgttattttagttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacacatatcagataaccttcacgcc |
29594489 |
T |
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| Q |
118 |
aaattactggagaatgacaagaagaat |
144 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
29594488 |
aaattactggagaatggcaagaagaat |
29594462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 52077481 - 52077355
Alignment:
| Q |
18 |
gttaatatctttgttattttagttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgcc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52077481 |
gttaatatctttgttattttagttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttcacgcc |
52077382 |
T |
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| Q |
118 |
aaattactggagaatgacaagaagaat |
144 |
Q |
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|||||| ||||||||| |||||||||| |
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| T |
52077381 |
aaattagtggagaatggcaagaagaat |
52077355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 29058790 - 29058916
Alignment:
| Q |
18 |
gttaatatctttgttattttagttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgcc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
29058790 |
gttaatatctttgttattttagttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttcacttc |
29058889 |
T |
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| Q |
118 |
aaattactggagaatgacaagaagaat |
144 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
29058890 |
aaattactggagaatggcaagaagaat |
29058916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 29059084 - 29059168
Alignment:
| Q |
141 |
gaataaattaaatgatatatctatgattgtaacatcaactttcccatcataaaaaacaacccttctttcccatgctaaacttcac |
225 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| || ||||| |||||||||||||| |
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| T |
29059084 |
gaataaattaaatgatatatctatggttgtaacatcaactttcccataatagaaaacaacgctcctttcatatgctaaacttcac |
29059168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 52077187 - 52077102
Alignment:
| Q |
141 |
gaataaattaaatgatatatctatgattgtaacatcaactttcccatcataaaaaacaacccttctttcccatgctaaacttcacc |
226 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| || |||||||||| |||||| |||| |
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| T |
52077187 |
gaataaattaaatgatatatctatggttgtaacatcaactttcccatcatgggaaataactctcctttcccatgttaaactccacc |
52077102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 51288698 - 51288793
Alignment:
| Q |
18 |
gttaatatctttgttattttagttttgtttgtgttcattggga-tttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttc |
112 |
Q |
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|||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||| |||||| ||||||||||||||||| |
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| T |
51288698 |
gttagtatctttgctattttagttttgtttgtgttcagtgggattttttatcattaggagctcttgcaaaatttatacccatatcagataaccttc |
51288793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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