View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4682_low_2 (Length: 603)

Name: NF4682_low_2
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4682_low_2
NF4682_low_2
[»] chr6 (11 HSPs)
chr6 (232-584)||(16875234-16875584)
chr6 (4-215)||(16572753-16572964)
chr6 (6-215)||(16874637-16874845)
chr6 (4-210)||(16580774-16580980)
chr6 (4-210)||(16614400-16614606)
chr6 (408-559)||(16581475-16581626)
chr6 (408-559)||(16613754-16613905)
chr6 (232-297)||(16581385-16581450)
chr6 (232-297)||(16613930-16613995)
chr6 (464-524)||(16573652-16573712)
chr6 (233-302)||(16976916-16976983)
[»] chr2 (2 HSPs)
chr2 (6-154)||(233279-233427)
chr2 (21-215)||(21629538-21629732)
[»] chr1 (1 HSPs)
chr1 (6-154)||(7392068-7392216)
[»] chr7 (1 HSPs)
chr7 (6-144)||(48298405-48298543)
[»] scaffold0256 (1 HSPs)
scaffold0256 (21-119)||(10841-10939)
[»] chr3 (1 HSPs)
chr3 (525-577)||(38942055-38942107)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 232 - 584
Target Start/End: Original strand, 16875234 - 16875584
Alignment:
Q  232 tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaacaagttacttataattatacagtgtcacacaagttc 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||   ||||||||||||||||||||     
T  16875234 tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactccaacgataaacaagttgcttat---tatacagtgtcacacaagttt 16875330  T
Q  332 accgct-aagatgttgatcaacaatagtagagctctcattctgtctttctactaagttgatctccaatagcaatgctcttgcttatgaaacttgattgga 430  Q
    ||| || ||||  |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16875331 accacttaagagattgatcaataataggagagctctcattctgtatttctactaagttgatctccaatagcaatgcccttgcttatgaaacttgattgga 16875430  T
Q  431 attaaagatctttatggagctgtatataaactaaagaggaaatttaactgttgtgaacgtcttgtgttaaaatttgattgcagttaaaactgaaatacaa 530  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||    
T  16875431 attaaagatctttatgaagctgtatataaactaaagatgaaatttaactgttgtgaccgtcttgtgttatggtttgattgcagttaaaactgaaatacaa 16875530  T
Q  531 cgaaacaatcaattgcctgaaacagtaaattactcattatttgaaatgagtgtg 584  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16875531 cgaaacaatcaattgcctgaaacaataaattactcattatttgaaatgagtgtg 16875584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 16572753 - 16572964
Alignment:
Q  4 acgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaa 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16572753 acgagcataatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaa 16572852  T
Q  104 attatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaag 203  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16572853 attatccatccttgctaagagtaatgaaagagctacagaagtatgattaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaag 16572952  T
Q  204 acatgtcctatt 215  Q
    ||||||||||||    
T  16572953 acatgtcctatt 16572964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 16874637 - 16874845
Alignment:
Q  6 gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  16874637 gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaactctctatggtgcaggctttggcgttcgaattgactgagaaat 16874736  T
Q  106 tatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagac 205  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  16874737 tatccatccttgctaagagtaatgaaagagctacagaagcatggttaggaagtgtcggttggattgcactgccgctcctacaggtggcaggcgtgaagac 16874836  T
Q  206 atgtcctatt 215  Q
     |||||||||    
T  16874837 -tgtcctatt 16874845  T

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Target: chr6; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 16580774 - 16580980
Alignment:
Q  4 acgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16580774 acgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgaccgagaa 16580873  T
Q  104 attatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaag 203  Q
    ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||| ||| ||||||||||    
T  16580874 attatccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttcagatggtaggcgtgaag 16580973  T
Q  204 acatgtc 210  Q
    |||||||    
T  16580974 acatgtc 16580980  T

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Target: chr6; HSP #5
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 16614606 - 16614400
Alignment:
Q  4 acgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16614606 acgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgaccgagaa 16614507  T
Q  104 attatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaag 203  Q
    ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||| ||| ||||||||||    
T  16614506 attatccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttcagatggtaggcgtgaag 16614407  T
Q  204 acatgtc 210  Q
    |||||||    
T  16614406 acatgtc 16614400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 408 - 559
Target Start/End: Original strand, 16581475 - 16581626
Alignment:
Q  408 cttgcttatgaaacttgattggaattaaagatctttatggagctgtatataaactaaagaggaaatttaactgttgtgaacgtcttgtgttaaaatttga 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  16581475 cttgcttatgaaacttgattggaattaaagatctttatggagctgtacataaactaaagaggaaatttaactgttgtgaccatcttgtgttaagatttga 16581574  T
Q  508 ttgcagttaaaactgaaatacaacgaaacaatcaattgcctgaaacagtaaa 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16581575 ttgcagttaaaactgaaatacaacgaaacaatcaattgcctgaaacagtaaa 16581626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 408 - 559
Target Start/End: Complemental strand, 16613905 - 16613754
Alignment:
Q  408 cttgcttatgaaacttgattggaattaaagatctttatggagctgtatataaactaaagaggaaatttaactgttgtgaacgtcttgtgttaaaatttga 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  16613905 cttgcttatgaaacttgattggaattaaagatctttatggagctgtacataaactaaagaggaaatttaactgttgtgaccatcttgtgttaagatttga 16613806  T
Q  508 ttgcagttaaaactgaaatacaacgaaacaatcaattgcctgaaacagtaaa 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16613805 ttgcagttaaaactgaaatacaacgaaacaatcaattgcctgaaacagtaaa 16613754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 16581385 - 16581450
Alignment:
Q  232 tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca 297  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16581385 tagttcaacattaaataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca 16581450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 16613995 - 16613930
Alignment:
Q  232 tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca 297  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16613995 tagttcaacattaaataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca 16613930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 524
Target Start/End: Original strand, 16573652 - 16573712
Alignment:
Q  464 aagaggaaatttaactgttgtgaacgtcttgtgttaaaatttgattgcagttaaaactgaa 524  Q
    ||||||||||| ||||||  |||| |||||||||||||||||  |||||||||||||||||    
T  16573652 aagaggaaattgaactgtgatgaatgtcttgtgttaaaatttacttgcagttaaaactgaa 16573712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 16976983 - 16976916
Alignment:
Q  233 agttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaacaagtta 302  Q
    |||||| |||||||||| ||||||||||| |  ||||||||| |||||||||| | | ||||||||||||    
T  16976983 agttcaccattatataagagttcaacattga--tctacgtttcaattaaactcaagcaataaacaagtta 16976916  T

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Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 233427 - 233279
Alignment:
Q  6 gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat 105  Q
    |||| ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| |||||||||||||||    
T  233427 gagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaat 233328  T
Q  106 tatccatccttgcaaagagtaatgaaagagctacagaaggatggttagg 154  Q
    |||| ||||||||| |||||||||||||||||||||||| | |||||||    
T  233327 tatctatccttgcagagagtaatgaaagagctacagaagcaaggttagg 233279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 21629538 - 21629732
Alignment:
Q  21 tgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgcaa 120  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||| | ||||||||| |||||||||||||||||| | ||| |||| ||||||||||    
T  21629538 tgggatcaaccatctgggtgcattgtattccgaaatgttgaacactcaagggtgcaggccttggcgttcgagttgactaataaa-tatctatccttgcaa 21629636  T
Q  121 agagtaatgaaagagctacagaaggatggttaggaagtg-tcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtcctatt 215  Q
    |||||||||||||||||||| ||| | ||| |||   || || |||||||| || | ||||| |||||||||||| || | |||||||||||||||    
T  21629637 agagtaatgaaagagctacataagcaaggtcaggcgatgatcggttggattacaataccgctgcttcaggtggcatgcatcaagacatgtcctatt 21629732  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 7392068 - 7392216
Alignment:
Q  6 gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat 105  Q
    |||| ||||||||| |||||||| ||| ||||||||||| | |||||||||||||||| ||| | ||||||||||||||| ||| |||||||||||||||    
T  7392068 gagcttcatgcaagctgggatcaaccaactgggtgcattattttccgaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaat 7392167  T
Q  106 tatccatccttgcaaagagtaatgaaagagctacagaaggatggttagg 154  Q
    |||| ||||||||| |||||||||||||||||||||||| | |||||||    
T  7392168 tatctatccttgcagagagtaatgaaagagctacagaagcaaggttagg 7392216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 48298543 - 48298405
Alignment:
Q  6 gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat 105  Q
    |||| ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| |||||||||||||||    
T  48298543 gagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaactctcaagggtgcaggctttggcattccagttgactgagaaat 48298444  T
Q  106 tatccatccttgcaaagagtaatgaaagagctacagaag 144  Q
    |||| ||||||||| ||||||||||||||||| ||||||    
T  48298443 tatctatccttgcagagagtaatgaaagagcttcagaag 48298405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 10939 - 10841
Alignment:
Q  21 tgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgca 119  Q
    ||||| || |||||||| ||||||||||||| ||||||||||| ||| | ||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  10939 tgggaccaaccatctggatgcattgtgttccaaaatgttgaacactcaagggtgcaggctttgtcgttcaagttgactgagaaattatctatccttgca 10841  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 525 - 577
Target Start/End: Original strand, 38942055 - 38942107
Alignment:
Q  525 atacaacgaaacaatcaattgcctgaaacagtaaattactcattatttgaaat 577  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||| ||| ||||    
T  38942055 atacaacgaaacaatcaattgcatgaaatagttaattactcattctttcaaat 38942107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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