View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_low_3 (Length: 498)
Name: NF4682_low_3
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 2 - 384
Target Start/End: Complemental strand, 5622161 - 5621779
Alignment:
| Q |
2 |
tccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatttttccttcaatttaatgatctcatctaagggtgctatttggccagag |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5622161 |
tccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacaatatttttccttcaatttaatgatctcatctaagggtgctatttggccagag |
5622062 |
T |
|
| Q |
102 |
ttctgaaaaaatgtcgaggaaacaattgtcaatagttactgatcaagcaattttagtttgcatgcagcaggtaaggcatattatgagcataatagatgtc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5622061 |
ttctgaaaaaatgtcgaggaaacaattgtcaatagttactgatcaagcaattttagtttgcatgcagcaggtaaggcatattatgagcataatagatgtt |
5621962 |
T |
|
| Q |
202 |
gttagtatgacaactacagaaaaaataactattacaacttaatggttgagaaaaccagggcaagtagcagattagtaatacttttttaaggaacaacatc |
301 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
5621961 |
gttagtatgacaactacagaaaaaataactattacaacttaatggttgagaaaaccagggcaagtagcagattagcaatactcttttaaggaacaacatc |
5621862 |
T |
|
| Q |
302 |
gcaatagacaccaatataacagcaacaccaacagactcaaagtgtttactacaatccttcataaatacatattcaaatttcat |
384 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621861 |
gcaatagacaccaatataacagcaacgccaacagactcaaagtgtttactacaatccttcataaatacatattcaaatttcat |
5621779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 387 - 498
Target Start/End: Original strand, 5621579 - 5621690
Alignment:
| Q |
387 |
tctaccaggtagatctcgtcgttcatgcatgctgttttatttactttacacatctgtaccgtgcttccaatggagcgcgtacaacatttaggtttaaaat |
486 |
Q |
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|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||||| |
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|
| T |
5621579 |
tctaccaggtagatctcatcgttcatgcatgctgttatatttactttacacatctgtactgtgcttctgatggagcgtgtacaacatttaggtataaaat |
5621678 |
T |
|
| Q |
487 |
caaagagctata |
498 |
Q |
| |
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|||||||||||| |
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|
| T |
5621679 |
caaagagctata |
5621690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 30634634 - 30634741
Alignment:
| Q |
2 |
tccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatttttccttcaatttaatgatctcatctaagggtgctatttggccagag |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
30634634 |
tccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaccgatatttttccttcaatttaatgatatcatctaagggtgctatttgaccagaa |
30634733 |
T |
|
| Q |
102 |
ttctgaaa |
109 |
Q |
| |
|
|||||||| |
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|
| T |
30634734 |
ttctgaaa |
30634741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 21423420 - 21423527
Alignment:
| Q |
2 |
tccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatttttccttcaatttaatgatctcatctaagggtgctatttggccagag |
101 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
21423420 |
tccaagcacgccaaatgagttgctctcatccagtaaaatacgaaaccgatatttttccttcaatttaatgatatcatctaagggtgctatttgaccagaa |
21423519 |
T |
|
| Q |
102 |
ttctgaaa |
109 |
Q |
| |
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|||||||| |
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|
| T |
21423520 |
ttctgaaa |
21423527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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