View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_low_7 (Length: 444)
Name: NF4682_low_7
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 4793054 - 4793275
Alignment:
| Q |
18 |
gcaactaagataatgtggcattaaaattaaagaaaggatactcactcacctaattctcataccccttttgaattgatcctctcctgcactatcatgcaaa |
117 |
Q |
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| T |
4793054 |
gcaactaagatattgtggcattaaaattaaagaaagggtactcactcacctaattctcataccccttttgaattgatcctctcctgcactatcatgcaaa |
4793153 |
T |
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| Q |
118 |
ttgattcacacggtacaattatttcttaaaggactatacatgaccttgtcaaattaaattaaaagaactaccaaagaatcctccaataattg----taat |
213 |
Q |
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| T |
4793154 |
ttgattcacacggtacaattatttcttaaaggactatacatgaccttttcaaatcaaattaaaagaactaccaaagaatcctccaataattgtaattaat |
4793253 |
T |
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| Q |
214 |
attgattcttggtccatcctat |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
4793254 |
attgattcttggtccatcctat |
4793275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 325 - 432
Target Start/End: Original strand, 4793368 - 4793475
Alignment:
| Q |
325 |
gaagttagtagacataatcataaaatatacaattaaagagatggaagggttgtttgtccactgtctcatcgataaacacttctgttgtgagctaggttgt |
424 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4793368 |
gaagttagtagacataatcataaaatataaaattaaagagatggaagggttgtttgtccactgtctcaccgataaacacttctgttgtgagctaggttgt |
4793467 |
T |
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| Q |
425 |
tcatttca |
432 |
Q |
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| T |
4793468 |
tcttttca |
4793475 |
T |
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