View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4682_low_8 (Length: 441)
Name: NF4682_low_8
Description: NF4682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4682_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 205 - 425
Target Start/End: Original strand, 2206870 - 2207090
Alignment:
| Q |
205 |
tttatgaattatttatgaaaatgcaataatacatatagatggaaaagaagaagnnnnnnnctattcaaatgagatgataaattatccgatgtaggaagag |
304 |
Q |
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| T |
2206870 |
tttatgaattatttatgaaaatgcaataatacatatagatggaaaagaagaaaaaaaaaactattcaaatgagatgataaattatccgatgtaggaagag |
2206969 |
T |
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| Q |
305 |
ttggaagaacttgaagaccaaacagcttctagcttgtattgcgatgaatcgcataaaatattgaaaattcctatgatacaccagaagataattattcaac |
404 |
Q |
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| T |
2206970 |
ttggaagaacttgaagaccaaacagcttctagcttgtattgcgatgaatcgcataaaatattgaaaattcctatgatacaccagaagataattattcaac |
2207069 |
T |
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| Q |
405 |
tcttgttccagtagatattga |
425 |
Q |
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||||||||||||||||||||| |
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| T |
2207070 |
tcttgttccagtagatattga |
2207090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 2206682 - 2206753
Alignment:
| Q |
17 |
atgaaacatgtcaaaaatcaattttacatctccgaaatcaattttaaccactttaatggtgtgtttgctttg |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2206682 |
atgaaacatgtcaaaaatcaattttacatctccgaaatcaattttaaccactttaatggtgtgtttgctttg |
2206753 |
T |
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