View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4683-Insertion-1 (Length: 1025)

Name: NF4683-Insertion-1
Description: NF4683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4683-Insertion-1
NF4683-Insertion-1
[»] chr4 (7 HSPs)
chr4 (7-784)||(49461072-49461877)
chr4 (549-781)||(42175728-42175963)
chr4 (848-909)||(47487831-47487892)
chr4 (854-909)||(47489353-47489407)
chr4 (853-900)||(51986232-51986279)
chr4 (809-850)||(49461902-49461942)
chr4 (856-907)||(32335851-32335902)
[»] chr8 (1 HSPs)
chr8 (851-999)||(29636854-29637005)
[»] chr2 (8 HSPs)
chr2 (850-909)||(45231565-45231624)
chr2 (848-909)||(5326193-5326254)
chr2 (851-909)||(20193222-20193280)
chr2 (850-907)||(19194073-19194130)
chr2 (850-909)||(20188308-20188367)
chr2 (851-906)||(35844940-35844995)
chr2 (850-901)||(45230040-45230091)
chr2 (850-907)||(35935367-35935424)
[»] chr1 (3 HSPs)
chr1 (848-909)||(46209533-46209594)
chr1 (851-909)||(46208009-46208067)
chr1 (851-904)||(50269307-50269360)
[»] chr5 (4 HSPs)
chr5 (852-906)||(21550031-21550085)
chr5 (854-906)||(21550365-21550417)
chr5 (849-909)||(37253398-37253458)
chr5 (848-907)||(38545504-38545563)
[»] scaffold0169 (1 HSPs)
scaffold0169 (848-909)||(24999-25060)
[»] scaffold0010 (1 HSPs)
scaffold0010 (850-907)||(128350-128407)
[»] chr7 (7 HSPs)
chr7 (848-905)||(28086469-28086526)
chr7 (848-909)||(33734980-33735040)
chr7 (842-907)||(24730981-24731046)
chr7 (849-909)||(1920931-1920991)
chr7 (851-907)||(45782021-45782077)
chr7 (852-902)||(28087755-28087805)
chr7 (851-904)||(9154297-9154350)
[»] chr3 (4 HSPs)
chr3 (849-906)||(37282952-37283009)
chr3 (850-907)||(2683198-2683255)
chr3 (854-909)||(46692968-46693023)
chr3 (851-900)||(22341231-22341280)
[»] chr6 (2 HSPs)
chr6 (847-909)||(655522-655584)
chr6 (850-907)||(9362741-9362798)


Alignment Details
Target: chr4 (Bit Score: 643; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 7 - 784
Target Start/End: Original strand, 49461072 - 49461877
Alignment:
Q  7 ataaagtttaataagggatctacccgaccttataaaagtcctacatgcttcttacattttaagataacctctaaatctggaaggggaaaaaacctggaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49461072 ataaagtttaataagggatctacccgaccttataaaagtcctacatgtttcttacatttcaagataacctctaaatctggaaggggaaaaaacctggaac 49461171  T
Q  107 ctgcatctcactccaaccgtccct-----------gagtgctcatgtgctatctcagataggtagagaagattattctcacaaaaatgtttggtaagttg 195  Q
    ||||||||||||||||||||||||           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49461172 ctgcatctcactccaaccgtccctaaatctgagaagagtgctcatgtgctatctcagataagtagagaagattattctcacaaaaatgtttggtaagttg 49461271  T
Q  196 ttgatatttctagcgactttcttaaaagttttatagtcaaaaacttacattcccaagtccaacaagagaataaattattgcccagaatctataatcatgc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49461272 ttgatatttctagcgactttcttaaaagttttatagtcaaaaacttacattcccaagtccaacaagagaataaattattgcccagaatctataatcatgc 49461371  T
Q  296 atgagctccggattttcaaataaagatgcagatacatttttaaccgatgatcactcaatctatgatgacccgtttgataaaacaaaataaagacaaactg 395  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49461372 atgagctctggattttcaaataaaaatgcagatacatttttaaccgatgatcactcaatctatgatgacccgtttgataaaacaaaataaagacaaactg 49461471  T
Q  396 caacagttgtataacaatctacaagtagatttggcatcacatgcaactatcacaa--ttctttttgtagataaatggaatgacaataaccaatggaaaac 493  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||| ||||||    
T  49461472 caacagttgtataacattctacaagtagatttggcatcaaatgcaactatcacaattttttttttgtagataaatggaatgacaataaccaattgaaaac 49461571  T
Q  494 tcaaacaaatgaggga---------------tgggtcacggtatccagtctaacaatttcaacatttgctagttgaactatgacttgggaacacaccgat 578  Q
    ||| |||| |||||||               || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49461572 tcagacaactgagggatcccatgtttgaacctgagtcacggtatccagtctaacaatttcaacatttgctagttgaactatgacttgggaacacaccgat 49461671  T
Q  579 catatttttatataagccattgatctttcaatcattaccattttctttacaaatttagagaattttacatgaaccaagaaactcagacctctacatacct 678  Q
    |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49461672 catattttcatacaagccattgatctttcaatcattacaattttctttacaaatttagagaattttacatgaaccaagaaactcagacctctacatacct 49461771  T
Q  679 tcttcccacatagaatgacaactatgctaaaacacaataaatcttgttgaaactgctgaaaccttcatatcaagttgattatggcaagtatataactata 778  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49461772 tcttcccacatagaatgacaactatgctaaaacacaacaaatcttgttgaaactgctgaaaccttcatatcaagttgattatggcaagtatataactata 49461871  T
Q  779 acagga 784  Q
    ||||||    
T  49461872 acagga 49461877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 549 - 781
Target Start/End: Original strand, 42175728 - 42175963
Alignment:
Q  549 agttgaactatgacttgggaacacaccgatcatatttttatataagccattgatctttcaatcattaccattttctttacaaatttagagaattttacat 648  Q
    |||||||||| || ||| |||  || |||||| |||||||||||||   ||||| ||||||||||||| |||||||||  |||||||||||||||||||     
T  42175728 agttgaactaggatttgtgaaagcaacgatcacatttttatataagttcttgatttttcaatcattacaattttcttt--aaatttagagaattttacaa 42175825  T
Q  649 gaaccaagaaactcagacctctacataccttcttcccacatagaatgacaactatgctaa--aacacaataaatcttgttgaaactgctga----aacct 742  Q
     ||| | ||||| | || || |||||||||||||||||||||||  | ||||||| ||||   ||| || || ||||| ||||||||| ||    |||||    
T  42175826 aaacgaggaaaccccga-ctttacataccttcttcccacatagagcgccaactatactaattcacagaacaagtcttgctgaaactgcggaacagaacct 42175924  T
Q  743 tcatatcaagttgattatggcaagtatataactataaca 781  Q
     |||||||||||| ||||||| ||||| ||||| |||||    
T  42175925 gcatatcaagttgtttatggctagtatctaactctaaca 42175963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 848 - 909
Target Start/End: Original strand, 47487831 - 47487892
Alignment:
Q  848 ttaggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    ||||||||||||||||||||| ||| |||||||||||| |||| ||||||||||||| ||||    
T  47487831 ttaggctaaaatgcacttttgaccccctatgtttggcttcgtagcaattttggccccttatt 47487892  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 854 - 909
Target Start/End: Complemental strand, 47489407 - 47489353
Alignment:
Q  854 taaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||    
T  47489407 taaaatgcacttttggccc-ctatgttaggctccgtagcaattttggccccatatt 47489353  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 853 - 900
Target Start/End: Original strand, 51986232 - 51986279
Alignment:
Q  853 ctaaaatgcacttttggccctctatgtttggctccgtatcaattttgg 900  Q
    ||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  51986232 ctaaaatgcacttttggtcctctatgtttgactccgtagcaattttgg 51986279  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 809 - 850
Target Start/End: Original strand, 49461902 - 49461942
Alignment:
Q  809 atgtaacaccaaaattgaatgaaaccaactgggaaaaactta 850  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  49461902 atgtaacaccaaaattgaatgaaaccaact-ggaaaaactta 49461942  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 856 - 907
Target Start/End: Original strand, 32335851 - 32335902
Alignment:
Q  856 aaatgcacttttggccctctatgtttggctccgtatcaattttggcccccta 907  Q
    ||||||||||||||||| ||||||||| | ||||| ||||||| ||||||||    
T  32335851 aaatgcacttttggccccctatgtttgccaccgtagcaattttagcccccta 32335902  T

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Target: chr8 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 851 - 999
Target Start/End: Complemental strand, 29637005 - 29636854
Alignment:
Q  851 ggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctattnnnnnnnnccacttttcaaccccataatttca-cccttttt 949  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||          ||||| || |||| |||||||| ||| ||||    
T  29637005 ggctaaaatgcacttttggccctctatatttggctccgtagcaattttgaccccctattaaaaaaaaatactttccagccccctaatttcaccccctttt 29636906  T
Q  950 gcaactcacaaggcccctc-aatttggactcggtcaaagg-cacatggctca 999  Q
    |||||||||| | |||||| ||||| |||||||||||||| |||||||||||    
T  29636905 gcaactcacatgccccctctaattttgactcggtcaaaggccacatggctca 29636854  T

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Target: chr2 (Bit Score: 48; Significance: 7e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 850 - 909
Target Start/End: Complemental strand, 45231624 - 45231565
Alignment:
Q  850 aggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  45231624 aggctaaaatgcacttttggccccctatgttaggctccgtagcaattttggccccctatt 45231565  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 848 - 909
Target Start/End: Original strand, 5326193 - 5326254
Alignment:
Q  848 ttaggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    ||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||| ||||||    
T  5326193 ttaggctaaaatgcacttttggccccctatatttggctctgtagcaattttggcctcctatt 5326254  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 851 - 909
Target Start/End: Complemental strand, 20193280 - 20193222
Alignment:
Q  851 ggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    ||||||||||||||||||| || ||| ||||||| ||||| ||||||||||||||||||    
T  20193280 ggctaaaatgcacttttggtcccctaagtttggccccgtagcaattttggccccctatt 20193222  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 850 - 907
Target Start/End: Original strand, 19194073 - 19194130
Alignment:
Q  850 aggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcccccta 907  Q
    ||||| ||||||||||||||||| ||||||||| || |||| ||||||||||||||||    
T  19194073 aggcttaaatgcacttttggccccctatgtttgtcttcgtagcaattttggcccccta 19194130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 850 - 909
Target Start/End: Original strand, 20188308 - 20188367
Alignment:
Q  850 aggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    |||||||||||||||||| |||| |||  |||||| ||||| ||||||||||||||||||    
T  20188308 aggctaaaatgcactttttgccccctaaatttggccccgtagcaattttggccccctatt 20188367  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 906
Target Start/End: Complemental strand, 35844995 - 35844940
Alignment:
Q  851 ggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccct 906  Q
    |||| ||||||| ||||||||||||||||||| || |||| |||||||| ||||||    
T  35844995 ggcttaaatgcatttttggccctctatgtttgccttcgtagcaattttgaccccct 35844940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 901
Target Start/End: Original strand, 45230040 - 45230091
Alignment:
Q  850 aggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggc 901  Q
    ||||||||||||||||||||| | |||||||||||| ||||  |||||||||    
T  45230040 aggctaaaatgcacttttggctccctatgtttggcttcgtagtaattttggc 45230091  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 850 - 907
Target Start/End: Original strand, 35935367 - 35935424
Alignment:
Q  850 aggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcccccta 907  Q
    ||||| ||||||||||||||||| |||| |||| |  |||| ||||||||||||||||    
T  35935367 aggcttaaatgcacttttggccccctatatttgccgtcgtagcaattttggcccccta 35935424  T

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Target: chr1 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 848 - 909
Target Start/End: Complemental strand, 46209594 - 46209533
Alignment:
Q  848 ttaggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||    
T  46209594 ttaggctaaaatgcacttttagccccctatgtttggctccgtagcaattttggcctcctatt 46209533  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 851 - 909
Target Start/End: Original strand, 46208009 - 46208067
Alignment:
Q  851 ggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    |||||||||||| |||||  ||||||||||||| || ||| ||||||||||||||||||    
T  46208009 ggctaaaatgcatttttgatcctctatgtttggttctgtagcaattttggccccctatt 46208067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 851 - 904
Target Start/End: Original strand, 50269307 - 50269360
Alignment:
Q  851 ggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcccc 904  Q
    |||||||||||||||||| ||| ||||||||  || |||| |||||||||||||    
T  50269307 ggctaaaatgcacttttgaccccctatgtttaccttcgtagcaattttggcccc 50269360  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 852 - 906
Target Start/End: Original strand, 21550031 - 21550085
Alignment:
Q  852 gctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccct 906  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||    
T  21550031 gctaaaatgcacttttggccccctatgtttggccccgtagcaattttgggcccct 21550085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 854 - 906
Target Start/End: Complemental strand, 21550417 - 21550365
Alignment:
Q  854 taaaatgcacttttggccctctatgtttggctccgtatcaattttggccccct 906  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||| |||||    
T  21550417 taaaatgcacttttggccgtctatgtttggcaccgtagcaattttggtcccct 21550365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 849 - 909
Target Start/End: Original strand, 37253398 - 37253458
Alignment:
Q  849 taggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    |||||||||||||| ||||| || |||||||||||||| ||| ||||||||||||| ||||    
T  37253398 taggctaaaatgcatttttgaccttctatgtttggctctgtagcaattttggccccttatt 37253458  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 848 - 907
Target Start/End: Complemental strand, 38545563 - 38545504
Alignment:
Q  848 ttaggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcccccta 907  Q
    ||||||| ||||| ||||||||||||||||||||| | ||||| ||||||| ||||||||    
T  38545563 ttaggcttaaatgtacttttggccctctatgtttgccaccgtagcaattttagcccccta 38545504  T

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Target: scaffold0169 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 848 - 909
Target Start/End: Original strand, 24999 - 25060
Alignment:
Q  848 ttaggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    ||||||||||||||||||||||||| ||||||||| |  |||| ||||||||||| ||||||    
T  24999 ttaggctaaaatgcacttttggccccctatgtttgaccacgtagcaattttggcctcctatt 25060  T

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Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 850 - 907
Target Start/End: Original strand, 128350 - 128407
Alignment:
Q  850 aggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcccccta 907  Q
    ||||| ||||||||||||||||| ||||||||| |  |||||||||||||||||||||    
T  128350 aggcttaaatgcacttttggccccctatgtttgccgtcgtatcaattttggcccccta 128407  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 848 - 905
Target Start/End: Original strand, 28086469 - 28086526
Alignment:
Q  848 ttaggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccc 905  Q
    ||||||||||||||||||||| |||  |||||||||||| ||| ||||||||||||||    
T  28086469 ttaggctaaaatgcacttttgcccccttatgtttggctctgtagcaattttggccccc 28086526  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 848 - 909
Target Start/End: Original strand, 33734980 - 33735040
Alignment:
Q  848 ttaggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    ||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||| |||||||    
T  33734980 ttaggctaaaatgcatttttgcccct-tatgtttggctgcgtatcaattttggctccctatt 33735040  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 842 - 907
Target Start/End: Complemental strand, 24731046 - 24730981
Alignment:
Q  842 aaaaacttaggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcccccta 907  Q
    ||||| ||||||| ||||| |||||||| || ||||||||| | ||||| ||||||||||||||||    
T  24731046 aaaaaattaggcttaaatgtacttttggtcccctatgtttgtcaccgtagcaattttggcccccta 24730981  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 849 - 909
Target Start/End: Original strand, 1920931 - 1920991
Alignment:
Q  849 taggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    |||||| ||| ||||||||||||| ||||||||| |  |||| ||||||||||||||||||    
T  1920931 taggcttaaacgcacttttggccccctatgtttgccatcgtaacaattttggccccctatt 1920991  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 851 - 907
Target Start/End: Original strand, 45782021 - 45782077
Alignment:
Q  851 ggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcccccta 907  Q
    |||| |||||||||||||| || ||||||||| | ||||| ||||||||||||||||    
T  45782021 ggcttaaatgcacttttggtcccctatgtttgccaccgtagcaattttggcccccta 45782077  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 902
Target Start/End: Complemental strand, 28087805 - 28087755
Alignment:
Q  852 gctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcc 902  Q
    |||||||||||||||||||||  ||| |||| ||||||| |||||||||||    
T  28087805 gctaaaatgcacttttggccccttatatttgactccgtagcaattttggcc 28087755  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 851 - 904
Target Start/End: Original strand, 9154297 - 9154350
Alignment:
Q  851 ggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcccc 904  Q
    |||| ||||||||||||| ||||||||||||| |  |||| |||||||||||||    
T  9154297 ggcttaaatgcacttttgaccctctatgtttgccatcgtagcaattttggcccc 9154350  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 849 - 906
Target Start/End: Original strand, 37282952 - 37283009
Alignment:
Q  849 taggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccct 906  Q
    |||||||||||||||||||| |||  ||||||||||||||||  ||||||||||||||    
T  37282952 taggctaaaatgcacttttgaccccttatgtttggctccgtagtaattttggccccct 37283009  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 850 - 907
Target Start/End: Complemental strand, 2683255 - 2683198
Alignment:
Q  850 aggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcccccta 907  Q
    ||||| ||||||||||||||||| |||| |||| | ||||| ||||||||||||||||    
T  2683255 aggcttaaatgcacttttggccccctatatttgccaccgtagcaattttggcccccta 2683198  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 854 - 909
Target Start/End: Original strand, 46692968 - 46693023
Alignment:
Q  854 taaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    ||||||||||||||||||| ||| |||||||||||||  |||||| | ||||||||    
T  46692968 taaaatgcacttttggccccctaagtttggctccgtagtaatttttggcccctatt 46693023  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 851 - 900
Target Start/End: Original strand, 22341231 - 22341280
Alignment:
Q  851 ggctaaaatgcacttttggccctctatgtttggctccgtatcaattttgg 900  Q
    |||||||||||||||||| ||| |||| ||||||||| || |||||||||    
T  22341231 ggctaaaatgcacttttgaccccctatatttggctccatagcaattttgg 22341280  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 847 - 909
Target Start/End: Original strand, 655522 - 655584
Alignment:
Q  847 cttaggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggccccctatt 909  Q
    |||||||| ||||||||||||||||| ||||||||| |   ||| ||||||||||||||||||    
T  655522 cttaggcttaaatgcacttttggccccctatgtttgccatggtagcaattttggccccctatt 655584  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 850 - 907
Target Start/End: Original strand, 9362741 - 9362798
Alignment:
Q  850 aggctaaaatgcacttttggccctctatgtttggctccgtatcaattttggcccccta 907  Q
    ||||| ||||||||||||||||| ||||||||| | ||||| ||||||||| ||||||    
T  9362741 aggcttaaatgcacttttggcccactatgtttgccgccgtagcaattttggtccccta 9362798  T

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