View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4683-Insertion-2 (Length: 831)
Name: NF4683-Insertion-2
Description: NF4683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4683-Insertion-2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 216 - 831
Target Start/End: Complemental strand, 29605049 - 29604445
Alignment:
| Q |
216 |
acagggtatgtatgcttattttatttgtattgtaaacgaaccttaacaaaaataggagggtgaatagtgttaggtggcatatatttggttaacaatttct |
315 |
Q |
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| T |
29605049 |
acagggtatgtatgctt-----atttgtattgtaaacgaaccttaacaaaaataggagtgtgaatagtgttaggtggcatatatttggt---caatttct |
29604958 |
T |
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| Q |
316 |
cctctattttaatttttcttttaaaaaactataaatttgcaaccgtttatgcaatatattttaaccatccatctatcatttagctgaaaaaagtcaaccg |
415 |
Q |
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| T |
29604957 |
cctctattttaaattttcttttaaaaaactataaatttgcaatagtttatgcaatatattttaaccatccatccatcatttagctgaaaaaagtcaaccg |
29604858 |
T |
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| Q |
416 |
agagttacgatctagttggattttacacgcaaaaacagttgatcggaagttacgactcgatcggaagcgaaattgagatgtttatcgagccacttttaaa |
515 |
Q |
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| T |
29604857 |
ggagttacgatctagttggattttacacgcaaaaacaattgatcggaagttacaactcgatcggaagcgaaattgagatgtttatcgagccacttttaaa |
29604758 |
T |
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| Q |
516 |
agatattgaaaaattgggctctataagcttttgaaagacttggtctaaggaaataccgtccataggccaatatcacaaaaacaagatattttataattac |
615 |
Q |
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| T |
29604757 |
agatattgaaaaattgggctctataagcttttgaaagacttgatctaaggaaataccgtccataggccaatatcacaaaaacaagattttttataattac |
29604658 |
T |
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| Q |
616 |
accatgcaacatcctagttacacccctttaaaacaaattatttaacaataaatgcccaagaacccctaccttatatacattctatttaatatctttcatt |
715 |
Q |
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| T |
29604657 |
accatgcaacatcctagttacacccctttaaaacaaattatttaacaat-aatgcccaagaacccctaccttatatacattctatttaatatctttcatt |
29604559 |
T |
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| Q |
716 |
aactatatacaagtgaccctttttctctgtttgctannnnnnnnnnctacatttgaaactcgtgttaacacgtatgcaaattcagtttcatgcaatctac |
815 |
Q |
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| T |
29604558 |
aactacatacaagtga-cctttttctctgtttgctattttttttttctacatttgaaactcgtgttaacacgtatgcaaattcag-ttcatgcaatctac |
29604461 |
T |
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| Q |
816 |
agacactagggaaatt |
831 |
Q |
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| T |
29604460 |
agacactaggcaaatt |
29604445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 29605282 - 29605066
Alignment:
| Q |
8 |
gaaaaatcatatatcaaggggccaatgaaatcagaactcttggtttggatgtttgtgagaacataattttatcaattatatctacatatgaactatatta |
107 |
Q |
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| T |
29605282 |
gaaaaagcatatatcaaggggccaatgaaatcagaactcttggtttggatgtttgtgagaacataattttaccaattatatctacatatgaactatatta |
29605183 |
T |
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| Q |
108 |
tattatgagatgacatggttatgttaaaatctgatgatccaatgtaccaatgtgattatgaggtgacataatttatgatagaaaaaagaatacgtgtact |
207 |
Q |
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| T |
29605182 |
tattatgagatgacatggttatgttaaaatctgatgatccaatgtaccaatgtgattatgaggtgacataatttatgatagaaaaaagaatacgtgtact |
29605083 |
T |
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| Q |
208 |
taacattaacagggtat |
224 |
Q |
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| T |
29605082 |
taacattaacagggtat |
29605066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 492
Target Start/End: Original strand, 30438587 - 30438663
Alignment:
| Q |
416 |
agagttacgatctagttggattttacacgcaaaaacagttgatcggaagttacgactcgatcggaagcgaaattgag |
492 |
Q |
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| T |
30438587 |
agagttacgatctgatcgtattttacacacaaaaacaattgatcagaagttacgacacggttggaagcaaaattgag |
30438663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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