View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4683_low_1 (Length: 568)
Name: NF4683_low_1
Description: NF4683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4683_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 48650868 - 48650345
Alignment:
| Q |
1 |
catacaaaagttcggacatgtttcttgtaaaaataaatatttacggatgagattaatttataaaagggtaatattaacctgtagtaggagtgatggatgg |
100 |
Q |
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| T |
48650868 |
catacaaaagttcggacatgtttcttgtaaaaataaatatttacggatgagattaatttataaaagggtaatattaacctgtagtaggagtgatggatgg |
48650769 |
T |
|
| Q |
101 |
ggcataatgatattaatgagtttggtggaagatttgaggtggagggacacccattgccatagcctcggttgatctgtagacaggagcaggatggtggtac |
200 |
Q |
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| T |
48650768 |
ggcataatgatattgatgagtttggtggaagatttgaggtggagggacacccattgccatagcctcggttgatctgtagacaggagcagggtggtggtac |
48650669 |
T |
|
| Q |
201 |
atgattggcatcgcacccacaatagcctgcctcggcggcgggtacacgtagcccccacccattccatagctcagtttctgctgcatttgtccaacaattt |
300 |
Q |
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| T |
48650668 |
atgattggcatcgcacccacaatagcctgcctcggcggcgggtacacgtagcccccacccattccatagctcagtttctgctgcattcgtccaacaattt |
48650569 |
T |
|
| Q |
301 |
tttcaaattaaaataaaaatattatttcttgttattgaattgggcatgcaatacgtaataaccacctgacctacctgattgtaattgtaattcatatgat |
400 |
Q |
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| T |
48650568 |
tttcaaataaaaataaaaatattatttcttgttattgaattgggcatgcaatacgtaataaccaccagacctacctgattgtaattgtaattcatatgat |
48650469 |
T |
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| Q |
401 |
ctgttgcaatgtaggtgggcgtgtacctgaatgaatgagagaaagagattcattaaatcacattatatgcctcaactcaacgcctattttttagaacaaa |
500 |
Q |
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| T |
48650468 |
ctgttgcaatgtaggtgggcgtgtacctgaatgaatgagagaaagagattcactaaatcacattatatgccaaaactcaacgcctattttttagaacaaa |
48650369 |
T |
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| Q |
501 |
aagcaagaataaaatataatatat |
524 |
Q |
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| T |
48650368 |
aagcaagaataaaatataatatat |
48650345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 505 - 557
Target Start/End: Complemental strand, 48650269 - 48650217
Alignment:
| Q |
505 |
aagaataaaatataatatatatacccgtagaaaggaatggcgtgatgatgatg |
557 |
Q |
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| T |
48650269 |
aagaataaaatataatatatatacccgtagaaaggaagggcatgatgatgatg |
48650217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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