View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4683_low_2 (Length: 419)
Name: NF4683_low_2
Description: NF4683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4683_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 39054621 - 39055015
Alignment:
| Q |
11 |
aagaagttggctgatgctgatgtctccgaggaagatcaaaataacctacttaaatatttagcgaagaaggaaaccgaatatatgcgtcttcaaaggcata |
110 |
Q |
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| T |
39054621 |
aagaagttggctgatgctgatgtctccgaggaagatcaaaataacttacttaaatatttagcgaagaaggaaaccgaatatatgcgtcttcaaaggcata |
39054720 |
T |
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| Q |
111 |
aaatgggtgttgaggattttgagatgttaactatgattggaaaaggtgcatttggggaggtatatgatgcaatcaactactctttttcagtatataactc |
210 |
Q |
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| T |
39054721 |
aaatgggtgttgaggattttgagatgttaactatgattggaaaaggtgcatttggggaggtatatgatgcaatcaactactctttttcagtatataattc |
39054820 |
T |
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| Q |
211 |
tttacatgccccatccactaaatgttatacctctactggaattttgaaatttgttgcaggttagagtctgcagggaaaagactacagatcatgtatatgc |
310 |
Q |
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| T |
39054821 |
tttacatgccccatccactaaatgttatacctctactggaattttgaaatttgttgcaggttagagtctgcagggaaaagactacagatcatgtatatgc |
39054920 |
T |
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| Q |
311 |
aatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagtcatttactttattacattatgttctattgacgagaagctgctg |
405 |
Q |
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| T |
39054921 |
aatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagtcatttactttattacattatgttctattgacgagaagctgctg |
39055015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 30395459 - 30395297
Alignment:
| Q |
11 |
aagaagttggctgatgctgatgtctccgaggaagatcaaaataacctacttaaatatttagcgaagaaggaaaccgaatatatgcgtcttcaaaggcata |
110 |
Q |
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| T |
30395459 |
aagaagttggccgatgccgaggtctccgaagaagatcaaaacaacttacttaaatttttagagaaaaaggaaaccgaatatatgcgccttcagagagcca |
30395360 |
T |
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| Q |
111 |
aaatgggtgttgaggattttgagatgttaactatgattggaaaaggtgcatttggggaggtat |
173 |
Q |
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| T |
30395359 |
agatgggtgttgatgattttgagttattgactatgattggaaaaggtgcatttggggaggtat |
30395297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 263 - 367
Target Start/End: Complemental strand, 30394526 - 30394422
Alignment:
| Q |
263 |
gttgcaggttagagtctgcagggaaaagactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagt |
362 |
Q |
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| T |
30394526 |
gttgcaggtcagagtttgcagagagaagactactgattctgtatacgcaatgaaaaaactaaagaaatcagagatgcttcgcagaggacaggtttatagt |
30394427 |
T |
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| Q |
363 |
cattt |
367 |
Q |
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||||| |
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| T |
30394426 |
cattt |
30394422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 33638292 - 33638138
Alignment:
| Q |
18 |
tggctgatgctgatgtctccgaggaagatcaaaataacctacttaaatatttagcgaagaaggaaaccgaatatatgcgtcttcaaaggcataaaatggg |
117 |
Q |
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|||||||| |||| ||||| |||||||| || || ||||| ||||| ||||| | ||| ||||| | ||||| ||||| ||||| |||||||| ||||| |
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| T |
33638292 |
tggctgattctgaagtctctgaggaagagcagaacaacctgcttaagtattttgagaaaaaggagagggaatacatgcgacttcagaggcataagatggg |
33638193 |
T |
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| Q |
118 |
tgttgaggattttgagatgttaactatgattggaaaaggtgcatttggggaggta |
172 |
Q |
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| T |
33638192 |
ggctgatgattttgagcttctcaccatgatagggaagggtgcatttggagaggta |
33638138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 15871446 - 15871359
Alignment:
| Q |
268 |
aggttagagtctgcagggaaaagactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggt |
355 |
Q |
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|||||||| |||| |||| ||||| || | ||| |||||||| ||||| ||||| ||||||| ||||||||||||||||| ||||| |
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| T |
15871446 |
aggttagaatctgtcgggagaagacaactggtcaggtatatgccatgaagaagcttcagaaatcagagatgcttcgaagaggacaggt |
15871359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 15924306 - 15924219
Alignment:
| Q |
268 |
aggttagagtctgcagggaaaagactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggt |
355 |
Q |
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| T |
15924306 |
aggttagaatctgccgggagaaggcaactggtcaggtatatgctatgaagaagcttaagaaatcagagatgcttcgtagaggacaggt |
15924219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 367
Target Start/End: Original strand, 19700217 - 19700295
Alignment:
| Q |
289 |
agactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagtcattt |
367 |
Q |
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||||||| | ||||||| | ||||||||||||||||||| ||| |||||||||| ||| || |||||| |||||||| |
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| T |
19700217 |
agactactggtcatgtacaagcaatgaaaaagctaaagacatcagagatgcttcatagaagctaggtttacagtcattt |
19700295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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