View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4683_low_7 (Length: 249)
Name: NF4683_low_7
Description: NF4683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4683_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 4015393 - 4015229
Alignment:
| Q |
1 |
tgtgacaattcaactggagcttataaagtggtggcgttctgtaaacgagagacaacatcagatgtgaaagttctcaacttgggtgttgatgtttggagaa |
100 |
Q |
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| T |
4015393 |
tgtgataattcaactggagcttataaagtggtggcgttctgtaaacgagagacaacatcagatgtgaaagttctcaacttgggtgttgatgtttggagaa |
4015294 |
T |
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| Q |
101 |
acattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg |
165 |
Q |
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| T |
4015293 |
acattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg |
4015229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 4570593 - 4570741
Alignment:
| Q |
20 |
cttataaagtggtggcgttctgtaaacgagagacaacatcagatgtgaaagttctcaacttgggtgttgat---gtttggagaaacattgaaagttttcc |
116 |
Q |
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| T |
4570593 |
cttataaagtggtggcgtactgtaatcaagagacagcatcagaggtcagagttctcaatttgggtggtgatgatgtttggagaaatattgaaagttttcc |
4570692 |
T |
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| Q |
117 |
tgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg |
165 |
Q |
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| T |
4570693 |
tactgttcttggccacaaacctgtgtatttgagtggcactgtgaactgg |
4570741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 4017202 - 4017083
Alignment:
| Q |
1 |
tgtgacaattcaactggagcttataaagtggtggcgttctgtaaacgagagacaacatcagat------gtgaaagttctcaacttgggtgttgatgttt |
94 |
Q |
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| T |
4017202 |
tgtgataattcaactgcaacttataaagtggtggcatacggtgatcggaagacaacatcagattcagaggtgaaagttctcaatttgggtgatgatgttt |
4017103 |
T |
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| Q |
95 |
ggagaaacattgaaagtttt |
114 |
Q |
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| T |
4017102 |
ggagaaatattgacagtttt |
4017083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 21855786 - 21855725
Alignment:
| Q |
59 |
cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt |
120 |
Q |
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| T |
21855786 |
cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt |
21855725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 24331302 - 24331241
Alignment:
| Q |
59 |
cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt |
120 |
Q |
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| T |
24331302 |
cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt |
24331241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 29866911 - 29866968
Alignment:
| Q |
61 |
gatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctg |
118 |
Q |
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| T |
29866911 |
gatgtgagagttctcaatttcggtgatgatcgttggagaaatattgaaagttttcctg |
29866968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 29880931 - 29880984
Alignment:
| Q |
64 |
gtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcct |
117 |
Q |
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| T |
29880931 |
gtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttttcct |
29880984 |
T |
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