View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4684-Insertion-2 (Length: 158)
Name: NF4684-Insertion-2
Description: NF4684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4684-Insertion-2 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 2e-81; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 6 - 158
Target Start/End: Complemental strand, 29066928 - 29066776
Alignment:
| Q |
6 |
catcaacaatgttattggcacatggaggttgatactcatgttctgcatcacacccctttgatgagtcacattcatcaactaccattgcaaccacactttg |
105 |
Q |
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| T |
29066928 |
catcaacaatgttattggcacatggaggttgatactcatgttctgcatcacacccctttgatgagtcacattcatcaactaccattgcaaccacactttg |
29066829 |
T |
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| Q |
106 |
accatttccacttatggtgatgttgtgaagacaccttctcttagtattgaacc |
158 |
Q |
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| T |
29066828 |
accatttccacttatggtgatgttgtgaagacaccttctcttagtattgaacc |
29066776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 29068928 - 29069053
Alignment:
| Q |
6 |
catcaacaatgttattggcacatggaggttgatactcatgttctgcatcacacccctttgatgagtcacattcatcaactaccattgcaaccacactttg |
105 |
Q |
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| T |
29068928 |
catcaacaatgttatttggacaaggaggttggtaatcatgttgttcatcacatccctttctggagtcacactcatcaacaaccatggccaccacactttt |
29069027 |
T |
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| Q |
106 |
accatttccacttatggtgatgttgt |
131 |
Q |
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| T |
29069028 |
tccattcgcacttatggtaatgttgt |
29069053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 28956984 - 28956886
Alignment:
| Q |
6 |
catcaacaatgttattggcacatggaggttgatactcatgttctgcatcacacccctttgatgagtcacattcatcaactaccattgcaaccacacttt |
104 |
Q |
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| T |
28956984 |
catcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatccctttgtggagtcacactcatcaacaaccatggccaccacacttt |
28956886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 29058162 - 29058304
Alignment:
| Q |
6 |
catcaacaatgttattggcacatggaggttgatactcatgttctgcatcacacccctttgatgagtcacattcatcaactaccattgcaaccacactttg |
105 |
Q |
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| T |
29058162 |
catcaacaatgttgtttgggcaaggaggttgataatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttt |
29058261 |
T |
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| Q |
106 |
accatttccacttatggtgatgttgtgaagacaccttctctta |
148 |
Q |
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| T |
29058262 |
tccattggcacttatggtaattttgttgagacatctgctctta |
29058304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 3617469 - 3617586
Alignment:
| Q |
6 |
catcaacaatgttattggcacatggaggttgatactcatgttctgcatcacacccctttgatgagtcacattcatcaactaccattgcaaccacactttg |
105 |
Q |
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| T |
3617469 |
catcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgtagagtcacactcatcaaccaccgtggccactacactttt |
3617568 |
T |
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| Q |
106 |
accatttccacttatggt |
123 |
Q |
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| T |
3617569 |
tccattggcacttatggt |
3617586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 11854496 - 11854371
Alignment:
| Q |
6 |
catcaacaatgttattggcacatggaggttgatactcatgttctgcatcacacccctttgatgagtcacattcatcaactaccattgcaaccacactttg |
105 |
Q |
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|||||||||||||||| | ||| |||||||| || ||||||| | ||||||| |||||| |||||||| |||||||| ||||| || |||||||||| |
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| T |
11854496 |
catcaacaatgttatttggacaaggaggttggtaatcatgttgttcatcacatccctttctggagtcacactcatcaacaaccatggccaccacactttt |
11854397 |
T |
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| Q |
106 |
accatttccacttatggtgatgttgt |
131 |
Q |
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| T |
11854396 |
tccattcgcacttatggtaatgttgt |
11854371 |
T |
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