View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4684-Insertion-3 (Length: 288)
Name: NF4684-Insertion-3
Description: NF4684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4684-Insertion-3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 44883126 - 44882846
Alignment:
| Q |
8 |
tttataaaactcctatggcatcaaatccatcttttattcaagttcgttctaatcaatatcagcagcaatacgtgagtttatctcaaaatattcatcatcc |
107 |
Q |
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| T |
44883126 |
tttataaaactcctatggcatcaaatccatcttttattcaagttctttctaatcaatatcagcagcaatacgtgagtttatctcaaaatattcatcatcc |
44883027 |
T |
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| Q |
108 |
accacagaagactatttatggttatgaatatggtggaggcggagctacgcaagaacaagtatactacacacaacagcagcctgcaaatgcaaatgcacct |
207 |
Q |
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| T |
44883026 |
accacagaagactatttatggttatgaatatggtggaggtggagctacgcaagaacaagtatactacacacaacagcagcccgcaaatgcaaatgcacct |
44882927 |
T |
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| Q |
208 |
cctcagtaccaatccatgaccccagcacctgctgcagcagcactattagatgtttcaaaacaatttcctatagacaacaac |
288 |
Q |
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| T |
44882926 |
cctcagtaccaatccatgaccccagcacctgctgtagcagcactattagatgtttcaaaacaatttcctatagacaacaac |
44882846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 228
Target Start/End: Original strand, 9019638 - 9019764
Alignment:
| Q |
90 |
tcaaaatattcatcatccaccacagaagactatttatggttat---gaatatggtggaggcggagctacgcaagaacaagtatactacacacaacagcag |
186 |
Q |
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| T |
9019638 |
tcaaaatattcatcatccaccacagc---ctttttatggttattatgaatatggtggag------ctaagcaagaacaagtattctacccacaacagcag |
9019728 |
T |
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| Q |
187 |
cctgcaaatgcaaatgcacctcctcagtaccaatccatgacc |
228 |
Q |
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| T |
9019729 |
c------atgcaaatgcacctccttagtaccaatctatgacc |
9019764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 8978382 - 8978469
Alignment:
| Q |
197 |
caaatgcacctcctcagtaccaatccatgaccccagcacctgctgcagcagcactattagatgtttcaaaacaatttcctatagacaa |
284 |
Q |
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| T |
8978382 |
caaatgcaccttctcagtaccaatccatgaccacagcagtcgctgctgcaacaatgtccgatttttcaaaacaatttcctatatacaa |
8978469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 1253590 - 1253553
Alignment:
| Q |
150 |
agctacgcaagaacaagtatactacacacaacagcagc |
187 |
Q |
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| T |
1253590 |
agctacgcaagaacaagtatactacacacaaaagcagc |
1253553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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