View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4684_high_11 (Length: 238)
Name: NF4684_high_11
Description: NF4684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4684_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 24042506 - 24042731
Alignment:
| Q |
5 |
atacaaatagttggtgcttatgaagatgccgttgcggttcatgttgttatggagttatgtgctggtggtgagcttttcgatagaattattcagagagggc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
24042506 |
atacaaatagttggtgcttatgaagatgccgttgcggttcatgttgttatggagttatgtgctggtggtgagcttttcgataggattatacagagagggc |
24042605 |
T |
|
| Q |
105 |
attatagtgaaagaaaagcttctgaacttactaggttgattttaggtgttgttcaagcttgtcattctttaggggttatgcatagagatttgaagccgga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24042606 |
attatagtgaaagaaaagcttctgaacttactaggttgattttaggtgttgttcaagcttgtcattctttaggggttatgcatagagatttgaagccgga |
24042705 |
T |
|
| Q |
205 |
aaattttctgtttgttagtgatgatg |
230 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
24042706 |
aaattttctgtttgttagtcatgatg |
24042731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 18400000 - 18400204
Alignment:
| Q |
17 |
ggtgcttatgaagatgccgttgcggttcatgttgttatggagttatgtgctggtggtgagcttttcgatagaattattcagagagggcattatagtgaaa |
116 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||||| || ||||| |||||||||||||||||| | ||||||||| | || ||||||| ||||| |
|
|
| T |
18400000 |
ggtgcttatgaagatgcaatggcggttcatgttgtgatggaattgtgtgcaggtggtgagcttttcgatcggattattcagcgcggacattatactgaaa |
18400099 |
T |
|
| Q |
117 |
gaaaagcttctgaacttactaggttgattttaggtgttgttcaagcttgtcattctttaggggttatgcatagagatttgaagccggaaaattttctgtt |
216 |
Q |
| |
|
|||| || ||||||||| |||| || | ||||||||| |||| ||||||||| | || || ||||||||||| | ||||| || |||||||| || |
|
|
| T |
18400100 |
gaaaggcggctgaacttattaggactatagttggtgttgttgaagcctgtcattctcttggtgtgatgcatagagaccttaagcccgagaattttctctt |
18400199 |
T |
|
| Q |
217 |
tgtta |
221 |
Q |
| |
|
||||| |
|
|
| T |
18400200 |
tgtta |
18400204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 24421012 - 24420912
Alignment:
| Q |
20 |
gcttatgaagatgccgttgcggttcatgttgttatggagttatgtgctggtggtgagcttttcgatagaattattcagagagggcattatagtgaaagaa |
119 |
Q |
| |
|
|||| ||| ||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||| ||| | | ||||||||||||| ||||||| |
|
|
| T |
24421012 |
gcttctgaggatgctgttgctgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaagaa |
24420913 |
T |
|
| Q |
120 |
a |
120 |
Q |
| |
|
| |
|
|
| T |
24420912 |
a |
24420912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 38810374 - 38810325
Alignment:
| Q |
41 |
gttcatgttgttatggagttatgtgctggtggtgagcttttcgatagaat |
90 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
38810374 |
gttcatttggttatggagttgtgtgctggtggtgaacttttcgatcgaat |
38810325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University