View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4684_high_3 (Length: 393)

Name: NF4684_high_3
Description: NF4684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4684_high_3
NF4684_high_3
[»] chr8 (12 HSPs)
chr8 (1-255)||(35430936-35431192)
chr8 (1-113)||(39820436-39820547)
chr8 (320-376)||(35430816-35430872)
chr8 (1-56)||(1676719-1676774)
chr8 (1-51)||(13845241-13845291)
chr8 (1-53)||(13009493-13009545)
chr8 (47-113)||(36450694-36450759)
chr8 (41-111)||(44067574-44067644)
chr8 (1-50)||(3658154-3658203)
chr8 (71-116)||(13436907-13436952)
chr8 (41-113)||(33389295-33389367)
chr8 (1-53)||(40063958-40064010)
[»] chr7 (9 HSPs)
chr7 (1-115)||(23751907-23752020)
chr7 (1-53)||(29812664-29812716)
chr7 (1-100)||(12278842-12278941)
chr7 (1-50)||(4017797-4017846)
chr7 (41-115)||(21138929-21139002)
chr7 (2-114)||(21880160-21880272)
chr7 (1-50)||(22683758-22683807)
chr7 (1-53)||(17780084-17780136)
chr7 (5-53)||(23930230-23930278)
[»] chr5 (7 HSPs)
chr5 (1-111)||(7997108-7997218)
chr5 (1-53)||(43554528-43554580)
chr5 (3-53)||(39695999-39696049)
chr5 (12-109)||(36577616-36577717)
chr5 (1-43)||(42469228-42469270)
chr5 (1-51)||(25863211-25863261)
chr5 (2-51)||(31264446-31264495)
[»] chr6 (11 HSPs)
chr6 (1-110)||(12235462-12235571)
chr6 (1-53)||(6389750-6389802)
chr6 (1-53)||(17168463-17168515)
chr6 (1-53)||(26247433-26247485)
chr6 (1-113)||(34446572-34446690)
chr6 (3-47)||(2153893-2153937)
chr6 (2-112)||(33419181-33419292)
chr6 (1-53)||(19602181-19602233)
chr6 (1-54)||(12086344-12086397)
chr6 (1-49)||(6299519-6299567)
chr6 (1-49)||(6306329-6306377)
[»] chr4 (10 HSPs)
chr4 (1-115)||(3144585-3144704)
chr4 (1-113)||(39507059-39507171)
chr4 (42-113)||(17876214-17876285)
chr4 (1-53)||(20743278-20743330)
chr4 (1-53)||(31243548-31243600)
chr4 (3-43)||(49659533-49659573)
chr4 (14-53)||(23386166-23386205)
chr4 (3-53)||(6273953-6274003)
chr4 (1-53)||(24343514-24343566)
chr4 (1-53)||(53968553-53968605)
[»] chr2 (14 HSPs)
chr2 (1-53)||(23354652-23354704)
chr2 (1-53)||(25544488-25544540)
chr2 (1-50)||(38919213-38919262)
chr2 (1-53)||(23354995-23355047)
chr2 (1-53)||(24011043-24011095)
chr2 (1-56)||(12748691-12748746)
chr2 (47-113)||(30563474-30563540)
chr2 (1-50)||(37986786-37986835)
chr2 (1-55)||(22085011-22085066)
chr2 (1-90)||(18570979-18571068)
chr2 (1-50)||(10535762-10535811)
chr2 (4-53)||(11308004-11308053)
chr2 (1-113)||(34006930-34007043)
chr2 (1-53)||(19573985-19574037)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-56)||(1956-2011)
[»] chr3 (16 HSPs)
chr3 (1-56)||(15864840-15864895)
chr3 (1-51)||(25892467-25892517)
chr3 (1-112)||(25365469-25365580)
chr3 (1-111)||(24204983-24205093)
chr3 (1-101)||(26665143-26665243)
chr3 (2-48)||(1830351-1830397)
chr3 (1-116)||(3730105-3730217)
chr3 (1-50)||(34189434-34189483)
chr3 (1-53)||(14223853-14223905)
chr3 (44-122)||(7949015-7949092)
chr3 (71-113)||(17005548-17005590)
chr3 (71-112)||(25211607-25211648)
chr3 (1-50)||(25326433-25326482)
chr3 (1-53)||(12704657-12704709)
chr3 (1-53)||(25074796-25074848)
chr3 (1-53)||(52369782-52369834)
[»] chr1 (7 HSPs)
chr1 (1-115)||(19637775-19637889)
chr1 (1-53)||(42004947-42004999)
chr1 (4-52)||(6573999-6574047)
chr1 (1-51)||(6936402-6936452)
chr1 (2-47)||(12040688-12040734)
chr1 (8-50)||(48415728-48415770)
chr1 (1-116)||(7988388-7988503)
[»] scaffold0778 (1 HSPs)
scaffold0778 (1-49)||(4413-4461)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 35431192 - 35430936
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  35431192 ataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcggacatcgatgcatatccaacaccaggacacccctaatccaaaaagtgt 35431093  T
Q  101 ttgtgcttcatagattctaacctgtagcgtgaaggtcacaattatgatagttagaaaattatacataacataatgcctt-aagaaagaaaattcatttca 199  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35431092 ctgtgcttcatagattctaacctgtatcgtgaaggtcacaattatgatagttagaaaattatacataacataatgccttaaagaaagaaaattcatttca 35430993  T
Q  200 ttacagacatatgagacggt-nnnnnnnngctcaattctaaatctatgctcaaactc 255  Q
    ||||||||||||||||| ||         ||||||||||||||||||||||||||||    
T  35430992 ttacagacatatgagacagtaaaaaaaaagctcaattctaaatctatgctcaaactc 35430936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 39820436 - 39820547
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||| ||| | |||||| |||||||| ||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgacgcgtgtccgaca-cgggacacgcctaatccgagaagtgt 39820534  T
Q  101 ttgtgcttcatag 113  Q
      |||||||||||    
T  39820535 ccgtgcttcatag 39820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 35430872 - 35430816
Alignment:
Q  320 tccaatcttctaaatagcagtgttttagttaaaacaattcatgctaaagaatgacat 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35430872 tccaatcttctaaatagcagtgttttagttaaaacaattcatgctaacgaatgacat 35430816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1676719 - 1676774
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggaca 56  Q
    ||||||||||  |||||||| |||||||||||||||||||||||||||||||||||    
T  1676719 ataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcggaca 1676774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13845241 - 13845291
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 51  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  13845241 ataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtc 13845291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13009545 - 13009493
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||  ||||| ||||||||||||||| ||||||||||||    
T  13009545 ataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcgg 13009493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 36450759 - 36450694
Alignment:
Q  47 gtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatag 113  Q
    |||||||||| ||| |||| ||| |||||||||||| |||||||| || ||||| ||||||||||||    
T  36450759 gtgtcggaca-cgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 44067574 - 44067644
Alignment:
Q  41 ggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcat 111  Q
    ||||||||||||||||  ||||||| ||| |||||||||||| |||||| | || |||||  |||||||||    
T  44067574 ggtgtcgtgtcggacactgatgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3658154 - 3658203
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 50  Q
    |||||||||| ||||||| || || || ||||||||||||||||||||||    
T  3658154 ataataatttgagaaaataatgtagttcagtgtaatcataggtgtcgtgt 3658203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 13436952 - 13436907
Alignment:
Q  71 acaccaggacacccctaatccaagaagtgtttgtgcttcatagatt 116  Q
    ||||| |||||| ||||||||||| ||||| |||||||||||||||    
T  13436952 acaccgggacacgcctaatccaaggagtgtctgtgcttcatagatt 13436907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 33389367 - 33389295
Alignment:
Q  41 ggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatag 113  Q
    |||||||||||| ||| |||| ||| ||| ||||  ||| || |||||||||||||||||  |||||||||||    
T  33389367 ggtgtcgtgtcgaacaccgatacgtgtccgacactgggatacacctaatccaagaagtgtcggtgcttcatag 33389295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40063958 - 40064010
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||| ||| || | |||||||||||| ||||||||||    
T  40063958 ataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcgg 40064010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 23751907 - 23752020
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||  ||| | |||||| |||||||| | ||||||    
T  23751907 ataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgacgcgtgtcagaca-cgggacacgcctaatccgataagtgt 23752005  T
Q  101 ttgtgcttcatagat 115  Q
     ||||||||||||||    
T  23752006 ctgtgcttcatagat 23752020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29812716 - 29812664
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 29812664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 12278842 - 12278941
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    |||||||||||||||||||| ||| || |||||||| ||| ||||||||||||||| | | |||| ||  ||||| |||||| |||||||| || |||||    
T  12278842 ataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcggacaccaacgcgtgtctgacaccgggacacacctaatcctaggagtgt 12278941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4017846 - 4017797
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 50  Q
    |||||||||| |||||| |||||| ||||||||||||||| |||||||||    
T  4017846 ataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgt 4017797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 21139002 - 21138929
Alignment:
Q  41 ggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatagat 115  Q
    ||||||||||||||||| ||| ||| ||| |||||||||||| | ||||| | | |||||| |||||||||||||    
T  21139002 ggtgtcgtgtcggacat-gatacgtgtccgacaccaggacacgcttaatcaagggagtgttcgtgcttcatagat 21138929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 21880160 - 21880272
Alignment:
Q  2 taataatttaagaaaatgatatattttagtgtaatcataggtgtcg-tgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    ||||||||| ||||||| | ||| || |||||||| | | |||||| ||||||||| |||  | | ||| |||||||||||| |||||||| ||||||||    
T  21880160 taataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggaca-cgacacatgtccgacaccaggacacgcctaatccgagaagtgt 21880258  T
Q  101 ttgtgcttcataga 114  Q
      ||||||||||||    
T  21880259 ccgtgcttcataga 21880272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22683807 - 22683758
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 50  Q
    |||||||||| |||| |||||||| || |||| |||||||||||||||||    
T  22683807 ataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgt 22683758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17780136 - 17780084
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||||||||||||| ||| ||   |||||| ||||||||||||||||    
T  17780136 ataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcgg 17780084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 23930230 - 23930278
Alignment:
Q  5 taatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||| ||||||||| ||| || ||||||||||||||||| |||||||    
T  23930230 taatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcgg 23930278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 7997218 - 7997108
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    |||||||||| ||||||||||||| |  |||||||| ||| |||||||||||||||  || |||| ||| ||| |||||||| |||||| | ||||||||    
T  7997218 ataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcggacactgacgcgtgtccgacatcaggacacacctaattcgagaagtgt 7997119  T
Q  101 ttgtgcttcat 111  Q
    |||||||||||    
T  7997118 ttgtgcttcat 7997108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 43554528 - 43554580
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 43554580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 39696049 - 39695999
Alignment:
Q  3 aataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  39696049 aataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 39695999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 36577717 - 36577616
Alignment:
Q  12 agaaaatgatatattttagtgtaatcataggtgtcgtgtcg-----gacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgc 106  Q
    ||||||||||||| |||||| |||| ||| |||||||||||     |||| |||||||||||| ||| | ||| || ||||||||||||||||| |||||    
T  36577717 agaaaatgatataatttagtataattatatgtgtcgtgtcggtgtcgacaccgatgcgtatccgaca-cgggatacgcctaatccaagaagtgtctgtgc 36577619  T
Q  107 ttc 109  Q
    |||    
T  36577618 ttc 36577616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42469228 - 42469270
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggt 43  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  42469228 ataataatttgagaaaatgacatattttagtgtaatcataggt 42469270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25863211 - 25863261
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 51  Q
    |||||||||| ||||||||||||| || |||||||| ||| ||||||||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtc 25863261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 31264446 - 31264495
Alignment:
Q  2 taataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 51  Q
    ||||||||| ||||||||| ||| || |||||||||||| ||||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgtc 31264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 12235571 - 12235462
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    |||||||||  ||||||||| ||| || ||||||||||||||||||||||| |||| ||| | || |||  |||| ||||||||||||||||| ||||||    
T  12235571 ataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtccgacaccgacgtgtgtccggcaccgggacacccctaatccaaaaagtgt 12235472  T
Q  101 ttgtgcttca 110  Q
      ||||||||    
T  12235471 ccgtgcttca 12235462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6389750 - 6389802
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  6389750 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 6389802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17168515 - 17168463
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  17168515 ataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcgg 17168463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26247433 - 26247485
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||||||||||||| |||||||||| ||||||||||| |||||||||    
T  26247433 ataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcgg 26247485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 34446572 - 34446690
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg------acatcgatgcgtatccaacaccaggacacccctaatccaag 94  Q
    |||||||||| ||||||||| ||| || |||||||||||||||||||||||||      ||| ||| |||||||  ||||  |||||| |||||||||||    
T  34446572 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtccaacaccgacgcgtatctgacactgggacacacctaatccaag 34446671  T
Q  95 aagtgtttgtgcttcatag 113  Q
     |||||  |||||||||||    
T  34446672 gagtgtccgtgcttcatag 34446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 2153937 - 2153893
Alignment:
Q  3 aataatttaagaaaatgatatattttagtgtaatcataggtgtcg 47  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||    
T  2153937 aataatttaagaaaatgatataatttagtgtaattataggtgtcg 2153893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 33419181 - 33419292
Alignment:
Q  2 taataatttaagaaaatgatatattttagtgtaatcataggtgtcg-tgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    ||||||||| | ||| ||||||| || | |||||| ||| |||| | |||| |||| | | |||| |||||||||||||||  ||||||||||||||| |    
T  33419181 taataatttgaaaaattgatataattcaatgtaattatatgtgttggtgtcagacaccaacgcgtgtccaacaccaggacatgcctaatccaagaagtat 33419280  T
Q  101 ttgtgcttcata 112  Q
    ||||||||||||    
T  33419281 ttgtgcttcata 33419292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19602233 - 19602181
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||||||| || ||||||||||||||| | |||||||    
T  19602233 ataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcgg 19602181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12086397 - 12086344
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgga 54  Q
    |||||||||| ||| ||||| ||| || ||| ||||||||||||||||||||||    
T  12086397 ataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcgga 12086344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6299519 - 6299567
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtg 49  Q
    |||||||||| ||||||||||||| || | |||||| ||||||||||||    
T  6299519 ataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6299567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6306329 - 6306377
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtg 49  Q
    |||||||||| ||||||||||||| || | |||||| ||||||||||||    
T  6306329 ataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6306377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 3144704 - 3144585
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcg------gacatcgatgcgtatccaacaccaggacacccctaatccaag 94  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||      |||| | | |||| |||||||| | ||||| |||||||| ||    
T  3144704 ataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagacaccaacgcgtgtccaacacga-gacacacctaatccgag 3144606  T
Q  95 aagtgtttgtgcttcatagat 115  Q
    ||||||  |||||||||||||    
T  3144605 aagtgtccgtgcttcatagat 3144585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 39507171 - 39507059
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    ||||||||||| |||||||||||| || |||||||||||||||||  |||||||||  ||| ||| ||| |||||  ||||| |||| ||| || |||||    
T  39507171 ataataatttatgaaaatgatataattaagtgtaatcataggtgttatgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagtgt 39507072  T
Q  101 ttgtgcttcatag 113  Q
    |  ||||||||||    
T  39507071 tactgcttcatag 39507059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 17876214 - 17876285
Alignment:
Q  42 gtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatag 113  Q
    |||||||||| |||| ||| || | ||| |||||||||||| ||||||||||| ||||| ||||||||||||    
T  17876214 gtgtcgtgtcagacaccgacgcttgtccgacaccaggacacacctaatccaaggagtgtctgtgcttcatag 17876285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20743330 - 20743278
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||| ||| || ||||||||||||||||| |||||||    
T  20743330 ataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcgg 20743278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31243600 - 31243548
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||| ||| || |||||||||||||||||| ||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcgg 31243548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 49659573 - 49659533
Alignment:
Q  3 aataatttaagaaaatgatatattttagtgtaatcataggt 43  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcataggt 49659533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 23386166 - 23386205
Alignment:
Q  14 aaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  23386166 aaaatgatataatttagtgtaatcataggtgtcatgtcgg 23386205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 6273953 - 6274003
Alignment:
Q  3 aataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||| ||||||||||||| ||||||||||| ||||  ||||||||||    
T  6273953 aataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcgg 6274003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24343514 - 24343566
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||| | ||| || |||||||| ||||||||||||||||    
T  24343514 ataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcgg 24343566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 53968553 - 53968605
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||||||||||||| ||| || ||||  ||||||| |||||||||||    
T  53968553 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcgg 53968605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23354704 - 23354652
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  23354704 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 23354652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25544488 - 25544540
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcgg 25544540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38919213 - 38919262
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 50  Q
    |||||||||| |||||||| |||| |||||||||||||||||||||||||    
T  38919213 ataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 38919262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23355047 - 23354995
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||    
T  23355047 ataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcgg 23354995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24011043 - 24011095
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||| |||||    
T  24011043 ataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcgg 24011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12748691 - 12748746
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggaca 56  Q
    |||||||||| ||||||||| ||| || ||||||||||||||||| ||||||||||    
T  12748691 ataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtcggaca 12748746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 30563474 - 30563540
Alignment:
Q  47 gtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatag 113  Q
    |||||||||| | | |||||||| ||||||||||| |||||||||||| |||  |||||||||||||    
T  30563474 gtgtcggacacccaggcgtatccgacaccaggacaaccctaatccaaggagtacttgtgcttcatag 30563540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 37986786 - 37986835
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 50  Q
    |||||||||| | |||||||||||||| ||||||||||||||| ||||||    
T  37986786 ataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgt 37986835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22085011 - 22085066
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtc-gtgtcggac 55  Q
    |||||||||||||||||||| ||| ||||||||||||||  ||||| |||||||||    
T  22085011 ataataatttaagaaaatgacataatttagtgtaatcatttgtgtcggtgtcggac 22085066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 18570979 - 18571068
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtc-gtgtcggacatcgatgcgtatccaacaccaggacacccctaatc 90  Q
    |||||||||| ||||||||| ||| || | |||||||||| ||||| |||||| ||| |||| | ||||| |||||||||||| |||||||    
T  18570979 ataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgaaca-cgatacatatccgacaccaggacacgcctaatc 18571068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10535811 - 10535762
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 50  Q
    |||||||||| ||||||||| ||| || |||||||||||| |||||||||    
T  10535811 ataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 10535762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 11308053 - 11308004
Alignment:
Q  4 ataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    ||||||| | ||||||| ||| || |||||||||||||||||||||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcgg 11308004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34007043 - 34006930
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtc-gtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtg 99  Q
    |||||||||| ||||| ||| ||| || |||||||||||||||||| |||| ||||| | || ||| ||  ||||| | |||| |||||| |||| ||||    
T  34007043 ataataatttgagaaattgacataattcagtgtaatcataggtgtcggtgtgggacacctattcgtgtctgacaccggaacacacctaattcaaggagtg 34006944  T
Q  100 tttgtgcttcatag 113  Q
    |  |||||||||||    
T  34006943 tccgtgcttcatag 34006930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19573985 - 19574037
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||||||||||| | ||| || |||||||| ||||||| ||||||||    
T  19573985 ataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcgg 19574037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1956 - 2011
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggaca 56  Q
    ||||||||||  |||||||| |||||||||||||||||||||||||||||||||||    
T  1956 ataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcggaca 2011  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15864840 - 15864895
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggaca 56  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||    
T  15864840 ataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcggaca 15864895  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25892467 - 25892517
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 51  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||    
T  25892467 ataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtc 25892517  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 25365469 - 25365580
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    |||||||||| |||| |||| ||| ||  ||||||||||| ||||||||||||||| ||||| || | | |||||||||||| |||||||  || | |||    
T  25365469 ataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcggacaccgatgtgtgttcgacaccaggacacgcctaatctgaggaatgt 25365568  T
Q  101 ttgtgcttcata 112  Q
     |||||||||||    
T  25365569 atgtgcttcata 25365580  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 24205093 - 24204983
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    |||||||||| ||||||||| ||| |  |||||||| ||| |||||||||||||||  || |||| ||| |||||||||||| |||||| | || |||||    
T  24205093 ataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggacactgacgcgtgtccgacaccaggacacgcctaattcgaggagtgt 24204994  T
Q  101 ttgtgcttcat 111  Q
      |||||||||    
T  24204993 ccgtgcttcat 24204983  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 26665143 - 26665243
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    |||||||||| |||||||||  |  || | |||||| ||||| ||||||||||||| ||| |||| ||| ||||||| ||||||||||| |||| |||||    
T  26665143 ataataatttgagaaaatgacgtgattcactgtaattataggcgtcgtgtcggacaccgaagcgtgtccgacaccagaacacccctaattcaaggagtgt 26665242  T
Q  101 t 101  Q
    |    
T  26665243 t 26665243  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 1830351 - 1830397
Alignment:
Q  2 taataatttaagaaaatgatatattttagtgtaatcataggtgtcgt 48  Q
    ||||||||||||||||||| ||| || ||||||||||||||||||||    
T  1830351 taataatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3730217 - 3730105
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 100  Q
    |||||||||| ||| ||||| ||| || ||||||||||||||||||||||| |||| | |||| | ||   |||| |||||| |||||||| || |||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgtctgacaccaatgcatgtc---caccgggacacacctaatccgaggagtgt 3730121  T
Q  101 ttgtgcttcatagatt 116  Q
       |||||||||||||    
T  3730120 ccatgcttcatagatt 3730105  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34189434 - 34189483
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 50  Q
    |||||||||| ||||||||| |||||| ||||||||| ||||||||||||    
T  34189434 ataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14223905 - 14223853
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| |||||| |||||| ||||||||| ||||| ||||||||||||    
T  14223905 ataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg 14223853  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 7949015 - 7949092
Alignment:
Q  44 gtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatagattctaacc 122  Q
    |||||||||||||| |||  ||||||||||||||||||| |||||| | |  ||| ||||||||||| ||||| |||||    
T  7949015 gtcgtgtcggacat-gatttgtatccaacaccaggacacacctaatacgatgagtatttgtgcttcagagattataacc 7949092  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 17005590 - 17005548
Alignment:
Q  71 acaccaggacacccctaatccaagaagtgtttgtgcttcatag 113  Q
    ||||||||||||| ||||||| || ||||||||||||||||||    
T  17005590 acaccaggacacctctaatccgaggagtgtttgtgcttcatag 17005548  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 25211607 - 25211648
Alignment:
Q  71 acaccaggacacccctaatccaagaagtgtttgtgcttcata 112  Q
    |||||||||||| |||||||  ||||||||||||||||||||    
T  25211607 acaccaggacacgcctaatctgagaagtgtttgtgcttcata 25211648  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25326433 - 25326482
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 50  Q
    |||||||||||| ||||| ||||| ||||||||||| |||| ||||||||    
T  25326433 ataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgt 25326482  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12704709 - 12704657
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| | ||||||| ||| || | |||||||||||||||||||||||    
T  12704709 ataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcgg 12704657  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25074796 - 25074848
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||| ||| || |||||||||||||| || |||||||    
T  25074796 ataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcgg 25074848  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 52369782 - 52369834
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||| | ||| || | |||||||||||||||||||||||    
T  52369782 ataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcgg 52369834  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 19637775 - 19637889
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtc-gtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtg 99  Q
    |||||||||||||||||||| ||  || | |||||||||| ||||| |||||||||| |||| | ||||| ||||| |||| |||||||||| || |||     
T  19637775 ataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggaca-cgatacatatccgacaccgggacgcccctaatccgaggagta 19637873  T
Q  100 tttgtgcttcatagat 115  Q
    ||||||| ||||||||    
T  19637874 tttgtgcatcatagat 19637889  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42004999 - 42004947
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 53  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||| |||||||    
T  42004999 ataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcgg 42004947  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 6573999 - 6574047
Alignment:
Q  4 ataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcg 52  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| ||||||    
T  6573999 ataatttgagacaatgatataatttagtgtaatcataggtgttgtgtcg 6574047  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6936452 - 6936402
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 51  Q
    |||||||| | ||||||||| ||| || |||||||||||||||||||||||    
T  6936452 ataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtc 6936402  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 12040734 - 12040688
Alignment:
Q  2 taataatttaagaaaatgatat-attttagtgtaatcataggtgtcg 47  Q
    |||||||||||||||||||||| |||| ||| |||||||||||||||    
T  12040734 taataatttaagaaaatgatataatttcagtataatcataggtgtcg 12040688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 48415770 - 48415728
Alignment:
Q  8 tttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 50  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||    
T  48415770 tttaaaaaaatgatataatttagtgtaatcatagatgtcgtgt 48415728  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7988503 - 7988388
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtg-tcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtg 99  Q
    |||||||||||||||| ||| ||| || | |||||||||| ||| | |||||||||| | || ||||| |||||||| ||||   ||| |||||| |||     
T  7988503 ataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgtcggaca-caatacgtattcaacaccatgacatgtctagtccaaggagtt 7988405  T
Q  100 tttgtgcttcatagatt 116  Q
    | |||||||||||||||    
T  7988404 tatgtgcttcatagatt 7988388  T

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Target: scaffold0778 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4413 - 4461
Alignment:
Q  1 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtg 49  Q
    ||||||||||||||| |||||||| || ||||| ||||||| |||||||    
T  4413 ataataatttaagaatatgatataattcagtgtcatcatagatgtcgtg 4461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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