View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4684_low_1 (Length: 553)
Name: NF4684_low_1
Description: NF4684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4684_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 245 - 543
Target Start/End: Original strand, 12888711 - 12889012
Alignment:
| Q |
245 |
gactttatgggtagagaaagaaagaaactcagaaaaatgaaatgtataattttagatggagagagatagagattagctttgcttctgtggtcgaacttga |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
12888711 |
gactttatgggtagagaaagaaagaaactcagaaaaatgaaatgaagaactttagatggagagagatagagattagctttgcttatgtggtagaacttga |
12888810 |
T |
|
| Q |
345 |
agaagttaaaatagaa-gtacaccaaaccaaa---tattagatttgagtttgacaagtctttctaggcatcatgtgacgtgtagaaaatacgaaaatgca |
440 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12888811 |
agaagttagaatagaaagtacaccaaaccaaaagatattagatttgagtttgacaagtctttctaggcatcatgtgacatgtagaaaatacgaaaatgca |
12888910 |
T |
|
| Q |
441 |
gaaaaaagcctgtccaatccagctctttattttgaaaggatcccttcaagaaaccggttttattacaagttattgccataccaagcataactgtgtgtct |
540 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12888911 |
gaaaa-agcctgtccaatccagctctttattttgaaaggatcccttcaagaaaccggttttattacaagttattgccataccaagcataactgtgtatct |
12889009 |
T |
|
| Q |
541 |
gtg |
543 |
Q |
| |
|
||| |
|
|
| T |
12889010 |
gtg |
12889012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 12888465 - 12888660
Alignment:
| Q |
1 |
cctttataatccctcggttattcattcaattatttttccttattaaaaagattattgactaaatgatnnnnnnnnn--tggaaagaaagaaggtgaataa |
98 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12888465 |
cctttataaaccctcttttattcattcaattatttttccttattaaaaagattattgactaaatgataaaaaaaaaaatggaaagaaagaaggtgaataa |
12888564 |
T |
|
| Q |
99 |
taataatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12888565 |
taataatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaa |
12888660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 12904782 - 12904868
Alignment:
| Q |
103 |
aatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccata |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
12904782 |
aatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcactcccacgtccata |
12904868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 458 - 533
Target Start/End: Original strand, 12891277 - 12891352
Alignment:
| Q |
458 |
tccagctctttattttgaaaggatcccttcaagaaaccggttttattacaagttattgccataccaagcataactg |
533 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
12891277 |
tccagctctttattttgaaaggatcccttgaatgaaccggttttaatacaagttattgccttaacaagcataactg |
12891352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 12876622 - 12876531
Alignment:
| Q |
104 |
atgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaac |
195 |
Q |
| |
|
|||||||| || || ||||||||||||| |||| |||||| |||| | || ||||||||||| | ||| ||||||||||| ||||||||||| |
|
|
| T |
12876622 |
atgcttactagctcttgatcttgcaactcacgaagttgaatagttcggtagaaatgcattcccttagcatcacttccacggccatagtgaac |
12876531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 12924903 - 12924965
Alignment:
| Q |
103 |
aatgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattcc |
165 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
12924903 |
aatgcttacaagttcatcatcttgcaactcacgaagttgaatggttagataaaaatgcattcc |
12924965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 12929833 - 12929873
Alignment:
| Q |
148 |
tagataaaaatgcattccatgagcttcacttccacgcccat |
188 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
12929833 |
tagataaaaatgcattccatgatcttcactgccacgcccat |
12929873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 21114023 - 21113932
Alignment:
| Q |
105 |
tgcttacaaggtcatgatcttgcaactgacgatgttgaacagttagataaaaatgcattccatgagcttcacttccacgcccatagtgaaca |
196 |
Q |
| |
|
||||||||||||| ||||| |||| ||| || ||||| ||||||||| ||||||||||| | ||||||||| |||||||||| ||||||| |
|
|
| T |
21114023 |
tgcttacaaggtcttgatcatgcatctggagaaattgaatagttagatagaaatgcattcccttagcttcactcccacgcccattgtgaaca |
21113932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University