View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4684_low_15 (Length: 240)
Name: NF4684_low_15
Description: NF4684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4684_low_15 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 12888080 - 12888301
Alignment:
| Q |
19 |
gaagcgacctcgcaaattttttccaattcaaaagccaaatatcattaccacgtagtacccaaatcattttacattcagaatcatttggaaattttagaga |
118 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12888080 |
gaagcgaccttgcaaattttttccaattcagaagccaaatatcattaccacgtagtacccaattcattttacattcagaatcatttggaaattttagaga |
12888179 |
T |
|
| Q |
119 |
tattggatttggtacatctttccaaaacttgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaaccactaggttccaaataaacaaggt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12888180 |
tattggatttggtacatctttccaaaacttgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaaccactaagttccaaataaacaaggt |
12888279 |
T |
|
| Q |
219 |
ctatactatacactaacagatt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
12888280 |
ctatactatacactaacagatt |
12888301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 12895144 - 12895345
Alignment:
| Q |
20 |
aagcgacctcgcaaattttttccaattcaaaagccaaatatcattaccacgtagtacccaaatcattttacattcagaatcatttggaaattttagagat |
119 |
Q |
| |
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|||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||||| || || || ||||||||||||||||||||| |
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| T |
12895144 |
aagcgaccgcgcaaattttttccaattaagaagccaaatatcattatcacgtagtacccaattcattttgcactcggagtcatttggaaattttagagat |
12895243 |
T |
|
| Q |
120 |
attggatttggtacatctttccaaaacttgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaaccactaggttccaaataaacaaggtc |
219 |
Q |
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|||||||||| ||| |||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
12895244 |
attggatttgatactcctttccaatacttttccacaaaatttcttggaaccatctgcaatcatattttcaaaaaccactaagttccaaataaacaaggtc |
12895343 |
T |
|
| Q |
220 |
ta |
221 |
Q |
| |
|
|| |
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|
| T |
12895344 |
ta |
12895345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 12904249 - 12904415
Alignment:
| Q |
30 |
gcaaattttttccaattcaaaagccaaatatcattaccacgtagtacccaaatcattttacattcagaatcatttggaaattttagagatattggatttg |
129 |
Q |
| |
|
|||||| |||||||||| | || ||||| ||||| |||| || ||| ||||| |||||| || ||| | |||||||||||||||||||||||||||||| |
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| T |
12904249 |
gcaaatcttttccaattaagaaaccaaacatcatcaccaagttgtatccaaaacattttgcactcatatccatttggaaattttagagatattggatttg |
12904348 |
T |
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| Q |
130 |
gtacatctttccaaaacttgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaacca |
196 |
Q |
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| |||||||| |||||||||||||||| || |||||||||| |||||| |||||||||||||| |
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| T |
12904349 |
acattcctttccaatacttgtccacaaaattccttggaaccatcttcaagcacattttcaaaaacca |
12904415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 12193495 - 12193671
Alignment:
| Q |
20 |
aagcgacctcgcaaattttttccaattcaaaagccaaatatcattaccacgtagtacccaaatcattttacattcagaatcatttggaaattttagagat |
119 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||||| ||||||| | ||||||| |||||| || ||||| || ||||||| | | || ||| |
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| T |
12193495 |
aagcgaccgtgcaaaatttttccaattcataagccaaatatcatcaccacgttgaacccaaaacattttgcactcagactcgtttggaagtctaagggat |
12193594 |
T |
|
| Q |
120 |
attggatttggtacatctttccaaaacttgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaacca |
196 |
Q |
| |
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|||||||||| ||||||||||||| | | || |||||||| || || | |||||||| ||| ||||| |||||||| |
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| T |
12193595 |
attggatttgatacatctttccaatatctctctacaaaattccttggtatcatctgcatgcacatttttaaaaacca |
12193671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 12877267 - 12877091
Alignment:
| Q |
20 |
aagcgacctcgcaaattttttccaattcaaaagccaaatatcattaccacgtagtacccaaatcattttacattcagaatcatttggaaattttagagat |
119 |
Q |
| |
|
|||||||| |||||| |||||||||||| | ||||||||| | |||||| ||||||||| |||||| || ||| | |||||||||| | | || ||| |
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| T |
12877267 |
aagcgaccgtgcaaatcttttccaattcactaaccaaatatcgtatccacgtcgtacccaaaacattttgcactcaaactcatttggaagtctaagggat |
12877168 |
T |
|
| Q |
120 |
attggatttggtacatctttccaaaacttgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaacca |
196 |
Q |
| |
|
|||||||||| ||||||||||||| | | || |||||||||| |||| |||||||||||| |||||||||||||| |
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| T |
12877167 |
attggatttgatacatctttccaatatctctctgcaaaatttcttggaatcatctgcaagcacattttcaaaaacca |
12877091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 12881335 - 12881495
Alignment:
| Q |
40 |
tccaattcaaaagccaaatatcattaccacgtagtacccaaatcattttacattcagaatcatttggaaattttagagatattggatttggtacatcttt |
139 |
Q |
| |
|
||||||| | |||||||| ||||| ||| ||| |||||||| ||||||| || ||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
12881335 |
tccaattaagaagccaaacatcatcaccgcgttgtacccaattcattttgcactcagatccatttggaaattttagagatattggatttgaaactccttt |
12881434 |
T |
|
| Q |
140 |
ccaaaacttgtccacaaaatttctcggaaccatctgcaag----catattttcaaaaacca |
196 |
Q |
| |
|
|||| |||| ||||||||||| || |||| |||||||||| || |||||||||||||| |
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| T |
12881435 |
ccaatacttctccacaaaattccttggaagcatctgcaagaaagcacattttcaaaaacca |
12881495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 194
Target Start/End: Complemental strand, 12908764 - 12908609
Alignment:
| Q |
39 |
ttccaattcaaaagccaaatatcattaccacgtagtacccaaatcattttacattcagaatcatttggaaattttagagatattggatttggtacatctt |
138 |
Q |
| |
|
||||||||| |||||||||| ||| ||| ||| | |||||| ||||||| ||| | || ||||||||| ||| || |||||||||||||||||||| | |
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|
| T |
12908764 |
ttccaattctgaagccaaataccatcaccgcgttgcacccaattcattttgcatgctgacccatttggaagtttaagggatattggatttggtacatcat |
12908665 |
T |
|
| Q |
139 |
tccaaaacttgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaac |
194 |
Q |
| |
|
||||| | | || ||||||| || |||| |||||||||||| ||||||||||| |
|
|
| T |
12908664 |
tccaatatctctctgcaaaattccttggaatcatctgcaagcacgttttcaaaaac |
12908609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 12924404 - 12924513
Alignment:
| Q |
20 |
aagcgacctcgcaaattttttccaattcaaaagccaaatatcattaccacgtagtacccaaatcattttacattcagaatcatttggaaattttagagat |
119 |
Q |
| |
|
|||||| | ||||||| |||||||||| | || ||||| | ||| |||| | ||| ||||| |||||| |||||||| |||||||||||||||||||| |
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|
| T |
12924404 |
aagcgatcgcgcaaatcttttccaattaagaaaccaaacagcatcaccaatttgtatccaaaacattttgcattcagatccatttggaaattttagagat |
12924503 |
T |
|
| Q |
120 |
attggatttg |
129 |
Q |
| |
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|||||||||| |
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| T |
12924504 |
attggatttg |
12924513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 21114946 - 21114797
Alignment:
| Q |
30 |
gcaaattttttccaattcaaaagccaaatatcattaccacgtagtacccaaatcattttacattcagaatcatttggaaattttagagatattggatttg |
129 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| ||||||| || ||||| |||||||||| | ||| | ||||||||||||||||||||||||||||| |
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|
| T |
21114946 |
gcaaatcttttccaattcagaagccaaatatcatcaccacgttgttcccaattcattttacactgagacttatttggaaattttagagatattggatttg |
21114847 |
T |
|
| Q |
130 |
gtacatctttccaaaacttgtccacaaaatttctcggaaccatctgcaag |
179 |
Q |
| |
|
||||||||||||| | | || |||||||| || |||| |||||||||| |
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|
| T |
21114846 |
atacatctttccaatatctctctacaaaattccttggaatcatctgcaag |
21114797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 6477735 - 6477672
Alignment:
| Q |
148 |
tgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaaccactaggttccaaataa |
211 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
6477735 |
tgtccagaaaatttcttagaaccatatgcaagcatattttcaaaaatcactaagttccaaataa |
6477672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 6480787 - 6480724
Alignment:
| Q |
148 |
tgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaaccactaggttccaaataa |
211 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
6480787 |
tgtccagaaaatttcttagaaccatatgcaagcatattttcaaaaaccactaagtttcaaataa |
6480724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 6489156 - 6489093
Alignment:
| Q |
148 |
tgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaaccactaggttccaaataa |
211 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
6489156 |
tgtccagaaaatttcttagaaccatatgcaagcatattttcaaaaatcactaagttccaaataa |
6489093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 6492208 - 6492145
Alignment:
| Q |
148 |
tgtccacaaaatttctcggaaccatctgcaagcatattttcaaaaaccactaggttccaaataa |
211 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
6492208 |
tgtccagaaaatttcttagaaccatatgcaagcatattttcaaaaaccactaagtttcaaataa |
6492145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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