View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4684_low_18 (Length: 218)

Name: NF4684_low_18
Description: NF4684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4684_low_18
NF4684_low_18
[»] chr3 (8 HSPs)
chr3 (25-115)||(47315146-47315237)
chr3 (77-115)||(3178699-3178737)
chr3 (67-115)||(36539627-36539675)
chr3 (67-115)||(48206849-48206897)
chr3 (68-115)||(20382514-20382561)
chr3 (67-115)||(10839465-10839513)
chr3 (67-115)||(43347421-43347468)
chr3 (68-112)||(51336208-51336252)
[»] chr8 (2 HSPs)
chr8 (67-115)||(10112042-10112090)
chr8 (68-115)||(34697475-34697522)
[»] chr5 (9 HSPs)
chr5 (67-115)||(11856290-11856338)
chr5 (68-115)||(8457049-8457096)
chr5 (68-115)||(10052618-10052665)
chr5 (80-115)||(10081140-10081175)
chr5 (80-115)||(19322112-19322147)
chr5 (68-115)||(42119617-42119664)
chr5 (68-112)||(614478-614522)
chr5 (71-115)||(2676524-2676568)
chr5 (68-115)||(27916134-27916182)
[»] chr1 (7 HSPs)
chr1 (74-115)||(2756253-2756294)
chr1 (67-112)||(30252830-30252875)
chr1 (67-112)||(5558308-5558353)
chr1 (67-115)||(10907733-10907781)
chr1 (68-112)||(38859849-38859893)
chr1 (67-115)||(44107473-44107521)
chr1 (67-115)||(44462566-44462614)
[»] chr2 (2 HSPs)
chr2 (67-115)||(23685455-23685503)
chr2 (68-115)||(40780050-40780097)
[»] chr6 (2 HSPs)
chr6 (68-115)||(27863695-27863742)
chr6 (67-115)||(28750735-28750783)
[»] chr4 (2 HSPs)
chr4 (68-115)||(17888636-17888683)
chr4 (67-115)||(322634-322682)
[»] scaffold0016 (1 HSPs)
scaffold0016 (77-115)||(85506-85544)
[»] chr7 (2 HSPs)
chr7 (77-115)||(10334173-10334211)
chr7 (78-115)||(25128171-25128208)


Alignment Details
Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 47315146 - 47315237
Alignment:
Q  25 atatataaacctc-aaaaattgaacaatttccttaannnnnnngattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47315146 atatataaacctctaaaaattgaacaatttccttaatttttttgattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 47315237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 3178737 - 3178699
Alignment:
Q  77 ttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  3178737 ttgcaatttcgtatgtaaactcctataaatatgttgcaa 3178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 36539675 - 36539627
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||||||| ||||||||||| ||||||||| ||||||||| ||||||||    
T  36539675 gattatttgtttgcaatttcctatgtaaacccctataaatgtgttgcaa 36539627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 48206897 - 48206849
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  48206897 gattatttacttgcaatttcttatgtaaacacttataaatgtgttgcaa 48206849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 20382561 - 20382514
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||||||  ||||||||||||||||||||||||||||||  |||||||    
T  20382561 attatttgcttgcaatttcttatgtaaactcctataaatgcgttgcaa 20382514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 10839465 - 10839513
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||  |||||||||||||||||||| |||||| || ||||||||    
T  10839465 gattatttgcttgcaatttcttatgtaaacacctatacatgtgttgcaa 10839513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 43347421 - 43347468
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||  |||||||||||||||||||| ||||||| ||||||||||    
T  43347421 gattatttgcttgcaatttcttatgtaaac-cctataattatgttgcaa 43347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 51336252 - 51336208
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttg 112  Q
    |||||||| ||||||||||||| ||||||| |||||||| |||||    
T  51336252 attatttacttgcaatttcttacgtaaacttctataaatgtgttg 51336208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 10112090 - 10112042
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10112090 gattatttatttgcaatttcttatgtaaacccctataaatatgttgcaa 10112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 34697475 - 34697522
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||||||  ||||||||||||||||||| || ||||||||||||||||    
T  34697475 attatttgcttgcaatttcttatgtaaattcttataaatatgttgcaa 34697522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 11856338 - 11856290
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11856338 gattatttacttgcaatttcttatgtaaactcctataaatatgttgcaa 11856290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 8457049 - 8457096
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||    
T  8457049 attatttgcttgcaatttcttatgtaaacccctataaatatgttgcaa 8457096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 10052618 - 10052665
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  10052618 attatttgcttgcaatttcttatgtaaaagcctataaatatgttgcaa 10052665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 10081175 - 10081140
Alignment:
Q  80 caatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10081175 caatttcttatgtaaactcctataaatgtgttgcaa 10081140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 19322112 - 19322147
Alignment:
Q  80 caatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||||| ||||||||||||||||||||||||    
T  19322112 caatttcttatataaactcctataaatatgttgcaa 19322147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 42119664 - 42119617
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||| |||| |||||||||||||||| ||||||||| ||||||||    
T  42119664 attatttgtttgtaatttcttatgtaaacccctataaatgtgttgcaa 42119617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 614478 - 614522
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttg 112  Q
    |||||||  |||||||||||||||||||| ||||||||| |||||    
T  614478 attatttgcttgcaatttcttatgtaaacacctataaatgtgttg 614522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 2676524 - 2676568
Alignment:
Q  71 atttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||| ||| ||||||||||||||||| ||||||||| ||||||||    
T  2676524 attttttttcaatttcttatgtaaacccctataaatgtgttgcaa 2676568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 27916182 - 27916134
Alignment:
Q  68 attatttatttgcaatttcttatgtaaa-ctcctataaatatgttgcaa 115  Q
    ||||||| ||||||||||||||| |||| ||||||||||| ||||||||    
T  27916182 attatttgtttgcaatttcttatataaacctcctataaatgtgttgcaa 27916134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 2756253 - 2756294
Alignment:
Q  74 tatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2756253 tatttgcaatttcttatgtaaactcctataaatatgttgcaa 2756294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 30252830 - 30252875
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttg 112  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||    
T  30252830 gattatttgcttgcaatttcttatgtaaacccctataaatatgttg 30252875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 5558353 - 5558308
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttg 112  Q
    ||||||||  |||||||||| ||| |||||||||||||||||||||    
T  5558353 gattatttgcttgcaatttcatatataaactcctataaatatgttg 5558308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 10907733 - 10907781
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||  ||||||||||||||||| || ||||||||| ||||||||    
T  10907733 gattatttgcttgcaatttcttatgtagacacctataaatgtgttgcaa 10907781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 38859893 - 38859849
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttg 112  Q
    |||||||  |||||||||||||||||||| ||||||||| |||||    
T  38859893 attatttgcttgcaatttcttatgtaaacccctataaatgtgttg 38859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 44107473 - 44107521
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||| |||||||||||||||||||  | ||||||| ||||||||    
T  44107473 gattatttacttgcaatttcttatgtaaaaccttataaatgtgttgcaa 44107521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 44462566 - 44462614
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||| ||||| |||||||| ||||| |||| |||||||||||||    
T  44462566 gattatttacttgcagtttcttatataaacccctaaaaatatgttgcaa 44462614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 23685455 - 23685503
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||  |||||||||||||||||||| | ||||||||||||||||    
T  23685455 gattatttgcttgcaatttcttatgtaaacccttataaatatgttgcaa 23685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 40780097 - 40780050
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||||||  ||||||||||||||||||||  |||||||||||||||||    
T  40780097 attatttgcttgcaatttcttatgtaaaccgctataaatatgttgcaa 40780050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 27863742 - 27863695
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||| |||||||||||||||||||||  |||||||| ||||||||    
T  27863742 attatttgtttgcaatttcttatgtaaacatctataaatgtgttgcaa 27863695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 28750735 - 28750783
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||  ||| |||||||||||||||||| ||||||| ||||||||    
T  28750735 gattatttgcttgtaatttcttatgtaaactcttataaatgtgttgcaa 28750783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 17888636 - 17888683
Alignment:
Q  68 attatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||||||  |||||||||||||||||||| ||||||||| ||||||||    
T  17888636 attatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 322634 - 322682
Alignment:
Q  67 gattatttatttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||  |||||||||||||||||||| ||| ||||| ||||||||    
T  322634 gattatttgcttgcaatttcttatgtaaacacctgtaaatgtgttgcaa 322682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 85544 - 85506
Alignment:
Q  77 ttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  85544 ttgcaatttcttatgtaaacctctataaatatgttgcaa 85506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 10334211 - 10334173
Alignment:
Q  77 ttgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  10334211 ttgcaatttcttatgtaaacccctataaatgtgttgcaa 10334173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 25128171 - 25128208
Alignment:
Q  78 tgcaatttcttatgtaaactcctataaatatgttgcaa 115  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  25128171 tgcaatttcttatgtaaacccatataaatatgttgcaa 25128208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University