View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4684_low_2 (Length: 441)
Name: NF4684_low_2
Description: NF4684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4684_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 420
Target Start/End: Complemental strand, 42313938 - 42313543
Alignment:
| Q |
12 |
aagaagcaattggcggagctgtttcgagaatctctgaaagcaactgtgcctagtgaacctgatgttgttcccttagttgaagcatgtgttgcaaataaaa |
111 |
Q |
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| T |
42313938 |
aagaagcaattggcggagctgtttcgagaatctctgaaagcaactgtgcctagtgaacctgatgttgttcccttagttgaagcatgtgttgcaaataaaa |
42313839 |
T |
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| Q |
112 |
atggtgtaaaatatgctgattatcagtggtaagttatcagtgataagttagggtttgttgcttatgaaacaacttaccactttcttagaatagattatat |
211 |
Q |
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| T |
42313838 |
atggtgtaaaacatgctgattatcagtggtaagtta--------------gggtttgttgcttatgaaacaacttaccactttcttagaatagattatat |
42313753 |
T |
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| Q |
212 |
tatatgaaaacaatttgacttgatcaaaattatgtacaaacgatcacttacattaccaaaataagctt-ttttgttgcttaaagctaatcaannnnnnnn |
310 |
Q |
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| T |
42313752 |
tatatgaaaacaatttgacttgatcaaaattatgtacaaacgatcacttacattgccaaaataagctttttttgttgcttaaagctaatcaatttttttt |
42313653 |
T |
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| Q |
311 |
nnnnnnnnaattctggatgcagtaataacgcgatgagtctttttcctattattaaagagaagcaacccgaattccgaaatccacgttcacttggagaggt |
410 |
Q |
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| T |
42313652 |
tttattttaattctggatgcagtaataacgcgatgagtctttttcctattattaaagagaagcaacccgaattccgaaatccacgttcacttggagaggt |
42313553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 421
Target Start/End: Original strand, 39711615 - 39711708
Alignment:
| Q |
328 |
tgcagtaataacgcgatgagtctttttcctattattaaagagaagcaacccgaattccgaaatccacgttcacttggagaggtataatctgaga |
421 |
Q |
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| T |
39711615 |
tgcagtaacaatgcaatgagtctttttgctaagattaaagagcaacaaccggaattcaaaaatccacgctcacttggagaggtataatcagaga |
39711708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 407
Target Start/End: Original strand, 51564735 - 51564814
Alignment:
| Q |
328 |
tgcagtaataacgcgatgagtctttttcctattattaaagagaagcaacccgaattccgaaatccacgttcacttggaga |
407 |
Q |
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| T |
51564735 |
tgcagtaataatgcaatgagtctttttgctaagattaaagggaagcaacaggagttcataaatccacgttcacttggaga |
51564814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 421
Target Start/End: Complemental strand, 47978253 - 47978151
Alignment:
| Q |
319 |
aattctggatgcagtaataacgcgatgagtctttttcctattattaaagagaagcaacccgaattccgaaatccacgttcacttggagaggtataatctg |
418 |
Q |
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| T |
47978253 |
aattcttgacgcagtaataatgcaatgagtctttttgctaagattaaagggaagcgaccggaattcaaaagtcctcgttcagtcggagaggtataatcag |
47978154 |
T |
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| Q |
419 |
aga |
421 |
Q |
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||| |
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| T |
47978153 |
aga |
47978151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 47978807 - 47978732
Alignment:
| Q |
65 |
tgaacctgatgttgttcccttagttgaagcatgtgttgcaaataaaaatggtgtaaaatatgctgattatcagtggtaa |
143 |
Q |
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| T |
47978807 |
tgaacctgatgttgttcccttaattgatgcttgtgttcca---aaaaacggtgttaaacatgctgattatcaatggtaa |
47978732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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