View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4684_low_6 (Length: 361)
Name: NF4684_low_6
Description: NF4684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4684_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 59 - 350
Target Start/End: Original strand, 52086849 - 52087141
Alignment:
| Q |
59 |
agtctatcaataacaacaacaacaacccatttttaataaagaatctgaaaactccatctttaacaacaacaacaacatgtttgttc-nnnnnnnnnnnnc |
157 |
Q |
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| T |
52086849 |
agtctatcaataacagcaacaacaacccatttttaataaagaatctgaaaactccatctttaacaacaacaacaacatgtttgttcaaaaaaaaaaacac |
52086948 |
T |
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| Q |
158 |
aacccagacttaaacaacaacaacaccatatctaaattgctctctttcgatttcaactcaacaataataacaccggtggcaatagcctcttcnnnnnnnn |
257 |
Q |
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| T |
52086949 |
aacccagacggaaacaacaacaacaccatatctaatttgctctctttcgatttcaactcaacaataacaacactagtggcaacaacctcttaaaaaaaaa |
52087048 |
T |
|
| Q |
258 |
nnnnnntagtggcaacaattcctcttttaataataacaatagagtgaaattttcacttcctccttctactcttttaacgtgtcctttcttctt |
350 |
Q |
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| T |
52087049 |
aaacactagtggcaacaattcctctttcaataataacaacagagtgaaattttcacttcctccttctactcttttaacgtgtcctttcttctt |
52087141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 59 - 352
Target Start/End: Original strand, 3537649 - 3537943
Alignment:
| Q |
59 |
agtctatcaataacaacaacaacaacccatttttaataaagaatctgaaaactccatctttaacaacaacaacaacatgtttgttc--nnnnnnnnnnnn |
156 |
Q |
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| T |
3537649 |
agtctatcaataacagcaacaacaactcatttttaataaagaatctgaaaactccatctttaacaacaacaacaacatgtttgttcaaaaaaataaaaaa |
3537748 |
T |
|
| Q |
157 |
caacccagacttaaacaacaacaacaccatatctaaattgctctctttcgatttcaactcaacaataataacaccggtggcaatagcctcttcnnnnnnn |
256 |
Q |
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| T |
3537749 |
caacccagactgaaacaacaacaacaccatatctaatttgctctctttcgatttcaactcaacaataacaacactagtggcaacaacctctt-aaaaaaa |
3537847 |
T |
|
| Q |
257 |
nnnnnnntagtggcaacaattcctcttttaataataacaatagagtgaaattttcacttcctccttctactcttttaacgtgtcctttcttcttct |
352 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3537848 |
aaaacactagtggcaacaattcctctttcaataataacaacagagtgaaattttcacttcctccttctacccttttaacgtgtcctttcttcttct |
3537943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 59 - 352
Target Start/End: Original strand, 10978228 - 10978523
Alignment:
| Q |
59 |
agtctatcaataacaacaacaacaacccatttttaataaagaatctgaaaactccatctttaacaacaacaacaacatgtttgttc------nnnnnnnn |
152 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10978228 |
agtctatcaataacaacaacaacgacccatttttaataaagaatctgaaaactccatctttaacaacaacaacaacatgtttgttcaaaaaaaataaaaa |
10978327 |
T |
|
| Q |
153 |
nnnncaacccagacttaaacaacaacaacaccatatctaaattgctctctttcgatttcaactcaacaataataacaccggtggcaatagcctcttcnnn |
252 |
Q |
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|||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| | |||||| |
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| T |
10978328 |
ataaaaaccgagactgaaacaacaacaacaccatatctaatttgctctctttcgatttcaactcaacaataacaacactagtggcaacaacctctt---- |
10978423 |
T |
|
| Q |
253 |
nnnnnnnnnnntagtggcaacaattcctcttttaataataacaatagagtgaaattttcacttcctccttctactcttttaacgtgtcctttcttcttct |
352 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10978424 |
aaaaaaaacactagtggcaacaattcctctttcaataataacaacagagtgaaattttcacttcctccttctactcttttaacgtgtcctttcttcttct |
10978523 |
T |
|
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