View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4684_low_8 (Length: 337)

Name: NF4684_low_8
Description: NF4684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4684_low_8
NF4684_low_8
[»] chr3 (12 HSPs)
chr3 (25-246)||(23352780-23353001)
chr3 (24-246)||(23448132-23448354)
chr3 (23-246)||(23454896-23455119)
chr3 (24-246)||(23499900-23500122)
chr3 (24-246)||(23479421-23479643)
chr3 (21-246)||(23387111-23387336)
chr3 (37-245)||(23405501-23405709)
chr3 (35-245)||(23464130-23464340)
chr3 (23-246)||(23440752-23440975)
chr3 (23-246)||(23473281-23473507)
chr3 (96-132)||(23469438-23469474)
chr3 (96-132)||(23401869-23401905)
[»] scaffold0201 (1 HSPs)
scaffold0201 (30-246)||(12289-12505)
[»] scaffold0570 (1 HSPs)
scaffold0570 (206-246)||(10752-10792)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 23352780 - 23353001
Alignment:
Q  25 catccatttctaggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttcttacgtgcaatccttctcacagagaaagg 124  Q
    |||| |||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||  || ||| | |||||||||||||||||||| |||||||     
T  23352780 catcaatttttaggataagatcttctatttgctctaaggtttccacaccatccaacacaacaaatactcttttacgtgcaatccttctcacggagaaaga 23352879  T
Q  125 ggcttctatgtagggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgtttaattca 224  Q
    || ||||||||||| |||||||||||||||||||||||||||| ||||  |||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  23352880 ggattctatgtaggatgcatcaggatgaagattttcttcctctaacaatgaagaaaaaaatttattgtgtagaccattgactccatacttgtttgattca 23352979  T
Q  225 tccattacattgaggaagcaac 246  Q
    ||||||||||||||||||||||    
T  23352980 tccattacattgaggaagcaac 23353001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 23448132 - 23448354
Alignment:
Q  24 ccatccatttctaggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttcttacgtgcaatccttctcacagagaaag 123  Q
    ||||| |||| ||||||||||||||||||||| ||||||||||| || |||| ||| |||||||||||||| |||||  ||||||||||| | |||||||    
T  23448132 ccatcaatttttaggataagatcttctatttgttctaaggtttctacaccatccaaaacaattaaaacttttttacgcccaatccttctctcggagaaag 23448231  T
Q  124 gggcttctatgtagggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgtttaattc 223  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| ||||  |||| | || |||||||||||||||||||| ||||||||||||| ||||    
T  23448232 gggcttctatgtaggatgcatcaggatgaatattttcttcctctaacaatgaagacagaagtttattgtgtagaacattgagtccatacttgtttgattc 23448331  T
Q  224 atccattacattgaggaagcaac 246  Q
    ||||||||||||||||| |||||    
T  23448332 atccattacattgaggacgcaac 23448354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 23454896 - 23455119
Alignment:
Q  23 cccatccatttctaggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttcttacgtgcaatccttctcacagagaaa 122  Q
    |||||| |||| |||||||| ||||||||||   ||||||||||||||||||| ||| ||||||| |||||| ||| | |||||||||||  | ||||||    
T  23454896 cccatcaatttttaggataaaatcttctattctctctaaggtttccacgccatccaatacaattataacttttttaagcgcaatccttctttcggagaaa 23454995  T
Q  123 ggggcttctatgtagggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgtttaatt 222  Q
    ||| ||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||| |||||||| || |||||||| ||||||||||||| |||    
T  23454996 gggacttctatgtagggtgcatcaggatgaagattttcttcctataacaatgaagataaaagtttattgtatacaacattgagtccatacttgtttgatt 23455095  T
Q  223 catccattacattgaggaagcaac 246  Q
    ||||||||||||||||||||||||    
T  23455096 catccattacattgaggaagcaac 23455119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 23499900 - 23500122
Alignment:
Q  24 ccatccatttctaggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttcttacgtgcaatccttctcacagagaaag 123  Q
    ||||| |||| | ||||||||||||||||||| ||||||||||| || |||| |||||||||||||||||| |||||  ||||||||||| | |||||||    
T  23499900 ccatcaatttttgggataagatcttctatttgctctaaggtttctacaccatccaacacaattaaaacttttttacgaccaatccttctctcggagaaag 23499999  T
Q  124 gggcttctatgtagggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgtttaattc 223  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| ||||  |||| |||| ||||||| ||| |||||| | ||||||||||||| ||||    
T  23500000 gggcttctatgtaggatgcatcaggatgaatattttcttcctctaacaatgaagacaaaagtttattgagtacaacattaagtccatacttgtttgattc 23500099  T
Q  224 atccattacattgaggaagcaac 246  Q
    ||||||||||||||| |||||||    
T  23500100 atccattacattgagtaagcaac 23500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 23479421 - 23479643
Alignment:
Q  24 ccatccatttctaggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttcttacgtgcaatccttctcacagagaaag 123  Q
    ||||| |||| | |||||||||| |||||||| ||||||||||| || |||| |||||||||||||||||| |||||  ||||||||||| | |||||||    
T  23479421 ccatcaatttttgggataagatcatctatttgctctaaggtttctacaccatccaacacaattaaaacttttttacgcccaatccttctctcggagaaag 23479520  T
Q  124 gggcttctatgtagggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgtttaattc 223  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| ||||  |||| |||| ||||||| ||| |||||| | ||||||||||||| ||||    
T  23479521 gggcttctatgtaggatgcatcaggatgaatattttcttcctctaacaatgaagacaaaagtttattgagtacaacattaagtccatacttgtttgattc 23479620  T
Q  224 atccattacattgaggaagcaac 246  Q
    ||||||||||||||| |||||||    
T  23479621 atccattacattgagtaagcaac 23479643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 23387111 - 23387336
Alignment:
Q  21 aacccatccatttctaggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttcttacgtgcaatccttctcacagaga 120  Q
    |||||||| || | ||||||||||||||||||||  |||||||| ||||| | || ||||||||| |||||||| |||||||||||||||||||| ||||    
T  23387111 aacccatcaatatttaggataagatcttctattttctctaaggtgtccacactatccaacacaatgaaaacttttttacgtgcaatccttctcacggaga 23387210  T
Q  121 aaggggcttctatgtagggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgtttaa 220  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||| ||||  |||| | || |||||||| || ||||| || ||||| ||| ||| |    
T  23387211 aaggggattctatgtaggatgcataaggatgaagattttcttcctctaacaatgaagacagaagtttattgtataaaacatcgagtccatgcttttttga 23387310  T
Q  221 ttcatccattacattgaggaagcaac 246  Q
    ||||||||||||||||||||||||||    
T  23387311 ttcatccattacattgaggaagcaac 23387336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 23405501 - 23405709
Alignment:
Q  37 ggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttcttacgtgcaatccttctcacagagaaaggggcttctatgta 136  Q
    ||||||||||||||||||  ||||||||||||| ||||| ||||||||| | |||||| ||| |||||||||||||||| ||||||| || ||| |||||    
T  23405501 ggataagatcttctattttctctaaggtttccatgccatccaacacaatgagaacttttttatgtgcaatccttctcacggagaaagaggattcaatgta 23405600  T
Q  137 gggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgtttaattcatccattacattg 236  Q
    || |||||| |||||||  |||||||||||| ||||  |||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |    
T  23405601 ggatgcatcgggatgaattttttcttcctctaacaatgaagacaaaagtttattgtgtagaccattgactccatacttgtttgattcatccattacatag 23405700  T
Q  237 aggaagcaa 245  Q
     ||||||||    
T  23405701 tggaagcaa 23405709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 35 - 245
Target Start/End: Original strand, 23464130 - 23464340
Alignment:
Q  35 taggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttcttacgtgcaatccttctcacagagaaaggggcttctatg 134  Q
    |||||||||||| |||| || ||||||||| ||||  |||| ||||||||| |||||||| ||| |||||||||||||||| ||||||| || |||||||    
T  23464130 taggataagatcatctaattaatctaaggtatccaaaccatccaacacaataaaaacttttttaagtgcaatccttctcacggagaaagaggattctatg 23464229  T
Q  135 tagggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgtttaattcatccattacat 234  Q
    |||| |||||| |||||||  |||||||||||| ||||  |||| |||| ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  23464230 taggatgcatcgggatgaattttttcttcctctaacaatgaagacaaaagtttattgtgtagaccattgactccatacttgtttgattcatccattacat 23464329  T
Q  235 tgaggaagcaa 245  Q
     | ||||||||    
T  23464330 agtggaagcaa 23464340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 23440752 - 23440975
Alignment:
Q  23 cccatccatttctaggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttcttacgtgcaatccttctcacagagaaa 122  Q
    |||||| |||| ||||||||||||||||||||| |||||||||||   ||||| |||||||||||||||||| ||||||| ||||||||||   ||||||    
T  23440752 cccatcaatttttaggataagatcttctatttgctctaaggtttctctgccatccaacacaattaaaacttttttacgtgaaatccttctcttggagaaa 23440851  T
Q  123 ggggcttctatgtagggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgtttaatt 222  Q
    | |||||||||||||| |||||||||||||| |||||| |||||| ||||  | ||||||| |||||||| || ||||||   ||||||| ||||| |||    
T  23440852 gtggcttctatgtaggatgcatcaggatgaatattttcctcctctaacaatgaggataaaagtttattgtatacaacattatgtccatacctgtttgatt 23440951  T
Q  223 catccattacattgaggaagcaac 246  Q
    |||| ||||||||||| |||||||    
T  23440952 catcaattacattgagaaagcaac 23440975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 23473281 - 23473507
Alignment:
Q  23 cccatccatttctaggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttc---ttacgtgcaatccttctcacagag 119  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||| | |||||  |||||||||||||||||    ||||||| ||||||||||   ||     
T  23473281 cccatcaatttttaggataagatcttctatttgctctaaggtttctatgccatctaacacaattaaaactttaattttacgtgaaatccttctcttggat 23473380  T
Q  120 aaaggggcttctatgtagggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgttta 219  Q
    |||| |||||||||||||| |||||||||||||| |||||| |||||| ||||  | ||||||| |||||||| || ||||||   ||||||| |||||     
T  23473381 aaagtggcttctatgtaggatgcatcaggatgaatattttcctcctctaacaatgaggataaaagtttattgtatacaacattatgtccatacctgtttg 23473480  T
Q  220 attcatccattacattgaggaagcaac 246  Q
    ||||||||||||||||||| |||||||    
T  23473481 attcatccattacattgagaaagcaac 23473507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 23469438 - 23469474
Alignment:
Q  96 ttacgtgcaatccttctcacagagaaaggggcttcta 132  Q
    ||||||||||||||||||||||||||||||| |||||    
T  23469438 ttacgtgcaatccttctcacagagaaaggggtttcta 23469474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 23401869 - 23401905
Alignment:
Q  96 ttacgtgcaatccttctcacagagaaaggggcttcta 132  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  23401869 ttacgtgcaatccttctcacagacaaaggggtttcta 23401905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 30 - 246
Target Start/End: Original strand, 12289 - 12505
Alignment:
Q  30 atttctaggataagatcttctatttgatctaaggtttccacgccatacaacacaattaaaactttcttacgtgcaatccttctcacagagaaaggggctt 129  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||||||| || ||    
T  12289 atttttaggataagatctgctatttgatgtatggtttccacgccatccaacacaatgaaaactttcttacgtgcaatccttctcatggagaaagaggatt 12388  T
Q  130 ctatgtagggtgcatcaggatgaagattttcttcctctgacaacaaagataaaaatttattgtgtagaacattgactccatacttgtttaattcatccat 229  Q
    ||| ||||| |||||||||||||||||||||||||||| ||||  |||| |||| |||| |||||| |||||||| ||||||||||||| |||||||| |    
T  12389 ctacgtaggatgcatcaggatgaagattttcttcctctaacaatgaagaaaaaagtttactgtgtataacattgagtccatacttgtttgattcatccct 12488  T
Q  230 tacattgaggaagcaac 246  Q
    |||||| ||||| ||||    
T  12489 tacattaaggaaacaac 12505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 10792 - 10752
Alignment:
Q  206 tccatacttgtttaattcatccattacattgaggaagcaac 246  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  10792 tccatacttgtttgattcatccattacattgagtaagcaac 10752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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