View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4685-Insertion-1 (Length: 130)
Name: NF4685-Insertion-1
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685-Insertion-1 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 109; Significance: 3e-55; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 45273624 - 45273748
Alignment:
| Q |
6 |
cagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagcaacattggcaccaggtccagtgttggcata |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
45273624 |
cagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcata |
45273723 |
T |
|
| Q |
106 |
ctctgcatagtaacatgtgttgtga |
130 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
45273724 |
ctctgcatagtaacatgtgttgtga |
45273748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 45281868 - 45281992
Alignment:
| Q |
6 |
cagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagcaacattggcaccaggtccagtgttggcata |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
45281868 |
cagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcata |
45281967 |
T |
|
| Q |
106 |
ctctgcatagtaacatgtgttgtga |
130 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
45281968 |
ctctgcatagtaacatgtgttgtga |
45281992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 45293208 - 45293328
Alignment:
| Q |
6 |
cagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagcaacattggcaccaggtccagtgttggcata |
105 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||| || |
|
|
| T |
45293208 |
cagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattggcaccaggtccagtgttggcgta |
45293307 |
T |
|
| Q |
106 |
ctctgcatagtaacatgtgtt |
126 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45293308 |
ctctgcatagtaacatgtgtt |
45293328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 45302168 - 45302288
Alignment:
| Q |
6 |
cagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagcaacattggcaccaggtccagtgttggcata |
105 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||| || |
|
|
| T |
45302168 |
cagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattggcaccaggtccagtgttggcgta |
45302267 |
T |
|
| Q |
106 |
ctctgcatagtaacatgtgtt |
126 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45302268 |
ctctgcatagtaacatgtgtt |
45302288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 45270083 - 45270194
Alignment:
| Q |
15 |
atttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagcaacattggcaccaggtccagtgttggcatactctgcata |
114 |
Q |
| |
|
||||| |||||||| ||||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45270083 |
atttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaa |
45270182 |
T |
|
| Q |
115 |
gtaacatgtgtt |
126 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
45270183 |
gtaacacgtgtt |
45270194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University