View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4685-Insertion-11 (Length: 162)
Name: NF4685-Insertion-11
Description: NF4685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4685-Insertion-11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 2e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 11849355 - 11849511
Alignment:
| Q |
6 |
cacagttctccacttctccgtacttagtgtgagttttgcaattaacagctctcaattacactcaccagtcaccactacgttttcataatctcctaattta |
105 |
Q |
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| T |
11849355 |
cacagttctccacttctccgtacttagtgtgagttttgcaattaacagctctcaattacactcaccagtcaccactatgttttcataatctcctaattta |
11849454 |
T |
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| Q |
106 |
ttgtgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatgattgg |
162 |
Q |
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| T |
11849455 |
ttgtgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatgattgg |
11849511 |
T |
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Target: chr2; HSP #2
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 11844626 - 11844782
Alignment:
| Q |
6 |
cacagttctccacttctccgtacttagtgtgagttttgcaattaacagctctcaattacactcaccagtcaccactacgttttcataatctcctaattta |
105 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11844626 |
cacagttctccacttctccgtacttagggtgagttttgcaattaacagctctcaattacactcaccagtcaccactatgttttcataatctcctaattta |
11844725 |
T |
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| Q |
106 |
ttgtgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatgattgg |
162 |
Q |
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| T |
11844726 |
ctgtgacaaatgtgtaggggtttcatcaagtctcggatccataggtttcatggttgg |
11844782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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